Aciduliprofundum boonei: Aboo_0181
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Entry
Aboo_0181 CDS
T01180
Name
(GenBank) 3' exoribonuclease
KO
K12589
exosome complex component RRP42
Organism
abi
Aciduliprofundum boonei
Pathway
abi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Aboo_0181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abi03019
]
Aboo_0181
Messenger RNA biogenesis [BR:
abi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Aboo_0181
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
Aboo_0181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-ProteinID:
ADD07993
UniProt:
D3TBQ8
LinkDB
All DBs
Position
complement(189233..190045)
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AA seq
270 aa
AA seq
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MSNSKFTAGVVPEMQRKYIHKLASKGTRVDGRHFDEIRNLTVTKGYIPRAEGSALVNLGN
TRVLVGVKIEPGTPFPDTPNMGILTTNAELAPLASPTFEPGPPGEEAIELARVVDRGIRE
GHAIDLEKLVIEEGEKVWIVFIDIHVLDYDGNLFDAAGYGALAALTNATVPASRYDLGED
FKLPVQHYPVPVTFAKIGDWIVADPNLDEESIASARLTVATNEEGKINAMQKGLSGTFTY
EEVKKVINMSMNIGGKVREIILGDSNGKED
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgagtaactcaaaattcactgctggtgtggtacctgagatgcaaagaaagtacattcac
aaacttgcatctaaaggcacaagggtagatggaaggcattttgatgagataagaaattta
acagttactaagggctatattcccagagccgaaggctcagctctggttaatttaggcaat
actagggttcttgtgggtgttaaaattgagccgggtactccattccctgatacacctaat
atgggcattctcaccaccaacgctgagcttgcacccctcgcctcccctacatttgaacct
ggtcctccgggagaagaagccatagaacttgctcgtgttgtggataggggtatacgagag
ggccatgccatcgaccttgaaaaattggtgatagaggaaggagaaaaagtttggattgtg
ttcatcgacatacatgtgcttgattacgatggaaatctctttgatgctgctggttatggt
gcccttgcagctcttactaatgcaactgttcctgcctcaaggtacgatttaggtgaggat
ttcaagttacctgtgcagcattatccagtacctgttacctttgcaaagattggagattgg
atagtggcagatccaaatcttgatgaggagagcattgcttcagcccgattgacagtggct
actaacgaagaaggaaaaataaacgctatgcagaagggactttctggtacatttacctat
gaggaagttaagaaagttataaatatgagtatgaatatcggcggaaaagtcagggagatc
attcttggtgattcaaatggcaaagaggactaa
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