Akkermansia biwaensis: Abiwalacus_08740
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Entry
Abiwalacus_08740 CDS
T08790
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
abiw
Akkermansia biwaensis
Brite
KEGG Orthology (KO) [BR:
abiw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
abiw03016
]
Abiwalacus_08740
Enzymes [BR:
abiw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Abiwalacus_08740
Transfer RNA biogenesis [BR:
abiw03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Abiwalacus_08740
Prokaryotic type
tRNA splicing ligases
Abiwalacus_08740
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Secretogranin_V
Hexapep
Motif
Other DBs
NCBI-ProteinID:
BDL43300
UniProt:
A0ABM7ZEV7
LinkDB
All DBs
Position
1094707..1095825
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AA seq
372 aa
AA seq
DB search
MITINGKYTEARVFTDELEDLARTQIRDVCHHPAFEGSRVRIMPDVHAGAGCVIGFTAEL
KTDKVIPNLIGVDIGCGVLTARLDALPDFAGFDARLRERVPSGMHARSAVHQALLDDPEL
DEEIARICVDILRTDKDKHRRSVGSLGGGNHFIEIAQGDRDAFLCIHSGSRNFGLKIAEH
YQKLATATCPNEYLVQRKKGLCYLEGENTLNYMRDMKVAQRFAALNRRVMLHELMDNAEE
LESFDTVHNYIAEDNIIRKGAVQASAGCKLIVPLNMRDGSVICIGKGNEEYNNSSPHGAG
RKMSRKKAKSSISLEEFETSMQGIFSTCVSRATLDEAPMAYKDGDSVLDNIHETAEIVER
LRPVYNFKSPEW
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atgattaccatcaacggaaaatacacggaagcccgggtgttcacggatgaactggaagac
ctggcacgcacccagatcagggacgtttgccaccacccggcctttgaaggaagccgggtg
cgcatcatgccggatgtccacgccggagccggctgcgtgatcggcttcaccgcggaactg
aaaacggacaaggtgattcccaacctgatcggcgtggacatcggctgcggcgtcctcacg
gcgcgtctggacgctcttccggattttgccgggtttgacgcccgtctgcgcgaacgcgta
ccgtccggcatgcacgcccgttccgctgtccaccaggccctgctggacgatccggaactg
gatgaagagatcgcccgcatctgcgtggacattctgaggacggacaaggacaagcaccgc
cgttccgtaggctccctgggcggcggcaaccacttcattgaaatagcgcagggagaccgg
gacgccttcctgtgcatccactccggctcccgcaacttcggtctgaaaatagcggaacat
taccagaaattggctaccgccacatgcccgaacgaatacctggtccagcgcaagaaaggg
ctctgctacctggagggggaaaacacgctgaattacatgcgggacatgaaagtggcccag
cgctttgccgcactgaaccgccgcgtgatgctgcacgaactgatggacaatgcagaagaa
ctggaaagcttcgacaccgtccacaactacatcgcggaagacaacatcatccgcaagggc
gccgtccaggcttccgcgggctgcaagctcatcgtgcctttgaacatgcgggacggctcc
gtcatctgcatcggcaagggaaatgaggaatacaacaattcgtccccgcacggggcaggt
cgcaaaatgtccagaaagaaagccaaaagcagcatctccctggaagagttcgagacctcc
atgcagggcatcttctccacctgcgtttcccgcgccacgctggatgaagcgcccatggcc
tacaaggacggagacagcgtgctggacaacatccatgaaacggcggaaatcgtggaacgc
ctccggcccgtatacaacttcaagtcgcctgaatggtag
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