Akkermansia biwaensis: Abiwalacus_09900
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Entry
Abiwalacus_09900 CDS
T08790
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
abiw
Akkermansia biwaensis
Brite
KEGG Orthology (KO) [BR:
abiw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abiw03019
]
Abiwalacus_09900
Enzymes [BR:
abiw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Abiwalacus_09900
Messenger RNA biogenesis [BR:
abiw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Abiwalacus_09900
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_30
AAA_19
nSTAND3
T2SSE
NACHT
SRP54
AAA_25
FtsK_SpoIIIE
ABC_tran
PhoH
Motif
Other DBs
NCBI-ProteinID:
BDL43416
LinkDB
All DBs
Position
1244952..1248647
Genome browser
AA seq
1231 aa
AA seq
DB search
MNITYPDLPISRRRNDILAALREHQVMVVVGETGSGKTTQLPKMAMELAGDRPGRVGCTQ
PRRLAAASVSRRVAEELGCELGGLVGYQVRFEEKAGPDTRLKFMTDGILLAETQHDPDLR
QYHTLILDEAHERSLNIDFLLGYLKLLLDRRPDLKLVISSATLDAGGFSEFFNGAPIVQV
EGRTYPVDLHYLPPLHEDEELAAHVARAVDWLDTLDDRGDVLVFLPGEREIREVAEKLEG
RRLRNTRILPLFARLGLEDQQRIFHPEQGYRRIVLATNVAETSLTIPGIIYVIDSGLARV
SRYSPARQVQRLQVEPVSKASARQRAGRCGRVCEGVCIRLYSEEDWEDRPDFTDPEIKRS
ALAGALLRMKDLGLPEMPEFPLPDPPSSKLVTEGYRTLREIGALDKARQLTPVGKKLARL
PIDPRLGRMLLEARHEQALPEMLVIVAGLGIMDPRERPSDAAQKADQAHAQWKDEDSDFL
SLLKLWKDAWQFREGRRWRKNQLRKWCGKNFLNFNRMMEWFNLWEDLSRLVKETLRCKIS
PLEQETDRQASFAMIHRSILAGVPRQFGLWDADSREYRSAGGRSFGIFPGSGLFRRKKRS
EWVMGVELVDTTRLWMRRAARLEPEWVEQVVPHLCESHYSGARWDKEQGAVYAVERVVCG
GLRIIDNRRVHYGRINPAHAREIMIREGLLGGGFRTKPACIRHLESLREEVRQIELKLRR
PDQVWCEEGVFQFFNGLVPQDCCTAKAFLRWAAGMEKKNPESLHVPAEEAMYEFWGKDLL
AGFPDEISCNGAEYAVYYQNDPGAEDDGVTLGVHIDQLPDVPEWLPEWGVPGHLAQRAEC
LLRTLPKDLRVFLQPISQKAAYFAELRHGLEPDGPLARKLAEFVEAETGRFCAPSFFDMN
RLPAELVTKVWVCDDEGEELAMGTDIAELNGRLDKKLSRRFRETAADIVSVTGMKEWSCG
NLERTVNVAGRPGYVALVDEDGSVGVRVFEDELRAAESHRKGCLRFMRLRQTDQLNHLRK
KFPLRLEGKLSLHTLGQVPSTNADDLVDVSAEMAMGRPLPRTAEQFAAAEMNLRQNLFDA
AHHVAEIWELVAATEHAARDFMAAQQGVRHTERITADLQSQLDWLLRPRFLWAHGAERLP
DLKRYMQGIAERIRRIDQQPLARELERLDLFERVYLPWHQALPEHSGDPRWTQYGYLLEE
YRLAVFAPAVSVKGRISEKRLGTAFEELNIR
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgaacatcacttatcctgaccttcccatctcccgccgccggaatgacattctggcggcc
ctgcgggagcatcaggtcatggtggtggtcggggaaacgggttccggcaaaaccacccag
cttcccaaaatggccatggaacttgccggagacaggccgggcagggtgggctgcacccag
cccagaaggctcgccgcggcttccgtctcccgccgtgtggcggaagaactgggctgtgaa
ctgggcggcctggtggggtaccaggtgcggtttgaagaaaaggcgggaccggatacgcgt
ttgaaattcatgacggacggcatcctgctggcggaaactcagcatgatccggacttgcgc
cagtaccataccctgatcctggacgaggctcacgaacgcagcctgaacatcgactttctg
cttggatatctcaagctcctgctggacaggcggccggacctgaagctggtgatcagctcc
gctacgctggacgcggggggattctccgaattcttcaacggcgcgcccatcgtgcaggtg
gaaggacgtacctacccggtggacctgcactatttgccgcccttgcatgaagacgaagag
ctggccgcccatgtggcgcgcgccgtggactggctggacacactggacgaccgcggggac
gtgcttgtctttcttcccggcgaacgggaaatacgggaggtggcggaaaaactggaaggc
cgccggttgaggaacacgcgcatcctgcccctttttgccaggctggggctggaggaccag
caaagaatcttccatccggagcaggggtacagacgcatcgtgcttgccacgaatgtggcg
gaaacgtccctgaccattcccggcatcatttacgtcattgactccggtctggcgcgtgtc
agccgctacagccccgcgcgccaagtgcagaggctccaggtagagcccgtctccaaggcc
agcgcgcgccagcgtgcgggacgctgcggacgcgtgtgcgaaggcgtctgcatacgcctg
tacagtgaagaggactgggaagaccgtccagactttacggacccggaaatcaagcgcagc
gccctggccggagccctgctcaggatgaaggacctgggattgccggaaatgccggaattc
ccgctgccggaccctccttcctccaaactggtgacggaaggctaccgcaccctgcgggaa
ataggagccctggacaaggcccggcagctcacgcccgtaggtaaaaaactggcacgccta
cccattgatccgcggctgggccgcatgctgctggaagcccggcatgaacaggccctgcct
gaaatgcttgtcatcgtggccggcctgggcatcatggatccccgtgagcgtccgtcggac
gccgcccagaaggcggaccaggctcatgcgcaatggaaggacgaagacagtgacttcctg
tccctgctcaagctgtggaaagatgcgtggcaattcagggaagggcggcgttggcgtaaa
aaccagctccgcaaatggtgcggaaaaaacttcctcaacttcaaccgcatgatggaatgg
ttcaacctgtgggaggacctctcccggctggtgaaggaaaccttgaggtgtaaaatatcc
cctctggaacaggaaacggaccgccaagcctcctttgccatgatccaccggagcattttg
gccggcgtgccgcgtcagttcggcctctgggatgcggacagccgggaataccgcagcgcg
ggggggcgttccttcggcatttttcccggctccggcctgttccgccgcaagaagcggagc
gaatgggtcatgggcgtggaactggtggacaccacccgcctgtggatgcgccgcgccgcc
cggctggaaccggagtgggtggagcaggtggttccccatctctgtgaatcccattactcc
ggagcgcggtgggacaaggaacagggtgcggtttacgcggtggagcgcgtggtatgcggc
ggcctgcgtatcattgacaacaggcgtgttcattacggacgcatcaatcccgcccatgcg
cgggaaatcatgatccgcgaaggactgcttggcggtggcttccgcacgaagcccgcctgc
atccggcatttggaatcgctccgcgaggaagtgcggcagatagaacttaaactacgccgc
ccggaccaggtctggtgcgaggaaggcgtttttcaattcttcaacggccttgttccgcag
gactgctgcacggcgaaggcttttttgcggtgggccgcaggcatggaaaaaaagaacccg
gaatccctgcatgttcccgcggaggaagccatgtatgaattctgggggaaggacttgctg
gccggtttcccggatgaaatttcatgcaacggcgcggaatacgccgtctattaccagaat
gaccccggcgcggaagatgacggcgtaaccttgggagtccacatcgaccagcttccggac
gtgccggaatggctgccggagtggggcgtgccgggccatttggcccagagggcggaatgc
ctgctgcgcacccttcccaaagacctgcgcgtctttctccagcccatcagccagaaagcc
gcctactttgccgaactgcggcatgggctggaaccggacggcccgctggcgcggaagctg
gcggaatttgtggaagcggaaacagggaggttctgtgctccatccttctttgacatgaac
cgtcttccggcggaactggttacaaaagtctgggtgtgcgacgatgaaggcgaagaactt
gccatgggtacggacattgcggagctgaacggccgcctggataaaaaactctcccgccgg
ttcagggaaacagcggcggacatcgtatccgtgaccggcatgaaggaatggagctgcgga
aatttggagcgtacggtgaatgtggcgggaaggccgggttatgtggccctggtggatgaa
gacggatctgtgggcgtccgtgtttttgaggatgaactgcgcgcggcggaatcccaccgg
aaagggtgtttgcgcttcatgcgcctgcgccagacggaccagctcaaccatctccgcaag
aaatttcctctgaggctggaagggaaactctccctacatacgctcgggcaggtgccgtcc
accaatgcggacgacttggtggacgtttccgcggagatggccatgggacgccccttgccg
cgcacggcggaacaatttgctgctgcggaaatgaacctgcgccagaacctctttgacgct
gcgcatcatgtagcagagatatgggaactggtggcggctacggaacatgctgccagagac
ttcatggccgcacaacagggagtgcgccatacggagcgcatcacggctgatctccagagc
cagcttgactggttgctccgcccccgtttcctgtgggcgcatggagcggagcgcctgccg
gacctgaagcggtacatgcagggcatcgcggagcgcatcaggcgtatcgaccagcagcct
cttgccagagagctcgaacgtctcgacctctttgaacgcgtatatcttccctggcatcag
gccctgccggaacattccggagacccgcgctggacgcagtacggctacctgctggaagaa
taccgcctggccgtcttcgcgcctgccgtctccgtcaagggccgtatctctgaaaagcgc
ctgggaaccgcttttgaagaattaaatattaggtag
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