Akkermansia biwaensis: Abiwalacus_12980
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Entry
Abiwalacus_12980 CDS
T08790
Name
(GenBank) sigma-54-dependent Fis family transcriptional regulator
KO
K02584
Nif-specific regulatory protein
Organism
abiw
Akkermansia biwaensis
Pathway
abiw02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
abiw00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Abiwalacus_12980
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
abiw03000
]
Abiwalacus_12980
Transcription factors [BR:
abiw03000
]
Prokaryotic type
Helix-turn-helix
Other families
Abiwalacus_12980
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Sigma54_activ_2
GAF
HTH_8
GAF_2
AAA_5
AAA
GAF_3
AAA_19
HTH_50
AAA_2
Mg_chelatase
AAA_30
bpMoxR
Motif
Other DBs
NCBI-ProteinID:
BDL43724
LinkDB
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Position
1635895..1637457
Genome browser
AA seq
520 aa
AA seq
DB search
MSPVSIQAATGCMNGMNKSPDLEMIVLQEISSAIVNERNGTVLLQHILDILYRRMKMLRG
TFTIRHGNDLMIEASHGLDEQEMKRGHYHVGEGITGHVAETGRPHVIEDISRDRRFLNRT
RTRKSGEKVAFICVPIIHLQQVIGTLSIDRPVDAETDLERDLKLMQIVGNIAGDALAACL
QAHEEREALVAENEKLRELLTSNPGELIGNCRPMLQVYEQIRQVAPSDATVLIRGSSGTG
KELVARAVVNLSARKDKPLITMNCAAMPENLLESELFGHEKGSFTGATSRRIGRAEAADG
GTLFLDEIGDLSLQMQVKLLRFLQEKTFSRVGSNRELHSDVRFIAATSRNLEELMAENKF
REDLYYRLNIFPIVMPDLIQRKGDIMLLAEHFLSKFNLKYGKHITRLSTPAINMLMAYHW
PGNVRELENCVERAVITAQDDCIYGYNLPASLQMPSSDAPNSRGGEEQADLPTMVDSFER
ELIVAALKRSPGNMSAAARGLGISPRVLHYKMHRLGLQKL
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atgagcccggttagtattcaggcagctacgggctgcatgaatggcatgaacaagtctccc
gatttggaaatgatcgtgttgcaggagattagttctgcaatcgtcaacgagcgcaacggc
acggtcctgttgcagcatatccttgatattttgtaccgccgcatgaagatgctgcgcggc
actttcaccatccgccacgggaacgacctgatgatcgaagcctcccacgggctggacgaa
caggaaatgaagcgcggccactaccatgtgggcgaaggcattacgggccatgtggcggaa
acgggccgtccccacgtgatcgaggatatttcccgggaccgcaggttcctgaaccgtacc
cgcacccgcaagagcggggaaaaggtggcgttcatctgcgtgcccatcattcatttgcag
caggtgatcggcaccttgagcatcgaccgccccgtggatgcggagacggatctggagcgg
gatttgaagctgatgcagattgtggggaacatcgcgggggatgccctggcggcatgtctc
caggcccacgaggaaagagaggccctggtggcggaaaatgagaagctgcgcgaattgctg
acgagcaatcccggcgagttgatagggaattgccgccccatgcttcaggtgtatgagcag
atacggcaggtggcccccagcgacgccacggtattgatccgcggcagttccggaacgggg
aaggaactggtggcgcgcgccgtggtgaatctgagcgccaggaaggacaagcctctgatt
acgatgaattgcgcggccatgccggaaaacctgctggaaagcgaattgttcggccatgaa
aagggatctttcaccggggctaccagccgccgcattggccgcgcggaagccgcggacggc
ggaaccctgtttctggatgaaatcggggatttgagcctgcaaatgcaggtgaagctgctg
cgttttttgcaggagaagactttttcccgcgtgggaagcaaccgggaattgcattccgac
gtgcgcttcatcgccgcgaccagccgaaacctggaggaactaatggcggaaaacaaattc
cgtgaagacctgtattaccgtctgaatatttttcccatcgtgatgccggaccttattcag
cgcaagggggacatcatgctgctggcggagcatttcctttccaagttcaatctcaagtac
gggaagcatatcacgcgcctttccaccccggccatcaacatgctgatggcctaccactgg
ccgggcaacgtccgggaactggagaattgtgtggagcgcgccgtcattacggcgcaggac
gattgcatttacgggtacaacctgcccgcctccctccagatgcccagcagcgacgccccg
aattcccgcggaggggaggaacaggcggatttgcccacgatggtggattcctttgaacgg
gaattgattgtggccgcactgaagcgctctccgggcaacatgtccgcggcggcccgggga
ttgggcatttctccgcgggtgctccattacaagatgcacaggctgggcctgcaaaagtta
tga
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