Akkermansia biwaensis: Abiwalacus_13960
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Entry
Abiwalacus_13960 CDS
T08790
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abiw
Akkermansia biwaensis
Pathway
abiw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abiw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Abiwalacus_13960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abiw03019
]
Abiwalacus_13960
03009 Ribosome biogenesis [BR:
abiw03009
]
Abiwalacus_13960
Enzymes [BR:
abiw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Abiwalacus_13960
Messenger RNA biogenesis [BR:
abiw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Abiwalacus_13960
Ribosome biogenesis [BR:
abiw03009
]
Prokaryotic type
rRNA helicases
Abiwalacus_13960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
BDL43822
LinkDB
All DBs
Position
1749151..1750965
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AA seq
604 aa
AA seq
DB search
MTQTSSFSTLGISPEVLEAIEVLGFDTPSAIQEQAIPAAIGGSDIVGLSHTGSGKTLAFA
IPALECIDPDERAVQVLALCPTRELAVQICREVDKLALFMDGVSAVPIYGGSSFRPQLDA
LRRGVQFVVGTPGRVMDLMESGALRLDHLRMLILDEADEMLDMGFLEDIERIAEAMPETK
QTLFFSATMSPEINRLVSRFMKDPVQITIERPTLTVPTIEQLYYEVVFSSRIEVLSRLLD
TGKIKMGLVFANTKKVVDDIVDGLTARGYAVDRLHGDMPQIMRERVMDSFRKGSLRLLVA
TDIAARGLDVDDVDAVVNFELPRDPEDYVHRIGRTARAGRKGKAITFVGRRDFSLMSRIE
RFIGVKLTPEPVMTAVQVDQLRTESLVDDILERLKPDAILPEELKDVEAAPESLAAALFD
LLRERTHREVQPIPEDKPARRPRHTQQSGEDGESPQKGDSWMNKDDTVTLFMNGGRMIGL
RPKDIAGLFYNTVEMEKGAVGDIRIFAKHSLIEVDASVAPQLLNTLANATICGYEVNVRE
DKGTPGYSDGPRPPRRNGGFRGGYRGDRDRNDRGGFRGNRGGFRSDREERWGDRPRKDDR
KKRF
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgactcagacatcttcattttcgacgcttggcatttcaccggaagttctggaggccatc
gaggttctcggcttcgacaccccgtccgccatccaggaacaagccattcccgcggccatc
ggagggtctgatattgtggggctttcccataccggttccggcaaaacgcttgcgtttgcc
attccggccctggagtgcattgatccggatgagcgcgccgtccaggtgctggccctgtgt
cccacgcgggaactggccgtgcagatttgccgggaggtggacaagctggccctgttcatg
gacggcgtttccgcggtgcccatttatggcggttcctccttccgcccccagttggatgcg
ctgcgccgcggcgtgcagttcgtggtaggtaccccgggccgcgtgatggacctgatggag
tccggagccctgcgcctggaccatctccgcatgctgattctggatgaagcggacgagatg
ctggacatgggattcctggaagatatcgaacgcatcgcggaggccatgccggaaacgaag
cagaccctgtttttctccgccaccatgtctccggagatcaaccggctggtgagccgtttt
atgaaggatcccgttcagattacgattgaacggcctacgctgacggtacccacgattgag
cagctttattacgaggtggtgttttcttccaggattgaggtactcagccgcctgctggat
acgggaaagatcaagatggggctggtgttcgccaataccaagaaagtggtggatgacatc
gtggacggcctgacggcccgggggtatgccgttgaccgtcttcacggtgacatgccccag
atcatgcgggagcgtgtgatggactctttccgcaaggggagcctccgcctgctggtagct
acggatattgccgcccggggcctggacgtggacgatgtggatgccgtggtgaattttgaa
ttgccgcgcgatcctgaggattacgtgcaccgcatcggccgcactgcgcgcgccgggcgc
aagggaaaagccattacgtttgtagggcgccgcgatttttcgctgatgagccggattgag
cgctttatcggcgtcaagctgactccagaaccggtgatgaccgccgtccaggtggaccag
ctgcggacggaatccctggtggatgatattctggaacgcctgaaaccggatgctattctc
ccggaagaattgaaggatgtggaagcggccccggaatccctggcggcggccttgtttgat
ttgctcagggagcgtacccaccgggaagtgcagcctattccggaagataagcccgctcgc
cggccgcgccatacgcagcagtccggagaggatggggaaagcccacagaaaggggattct
tggatgaacaaggatgatacggttacgctgttcatgaatggcggccgtatgattggcctg
cggcccaaggatattgccgggctgttttacaatacggtggagatggagaaaggcgccgtg
ggcgatatacgaatttttgccaagcattccctgattgaagtggacgcctccgtggctccc
cagcttctgaacactctggcgaacgctacgatttgcggctatgaggtcaatgttcgcgag
gacaagggcacgccgggatattccgatggtccgcgtcccccgcgcagaaacggcgggttc
cgcggcggctaccgtggtgaccgggaccgcaatgaccgcgggggcttcaggggaaaccgc
ggcgggttccgcagtgaccgggaagagcgctggggcgaccggccccgcaaggatgacagg
aagaagaggttctga
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