Acinetobacter baumannii AbH12O-A2: LX00_14580
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Entry
LX00_14580 CDS
T03374
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
abk
Acinetobacter baumannii AbH12O-A2
Pathway
abk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
abk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LX00_14580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abk03021
]
LX00_14580
Transcription machinery [BR:
abk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LX00_14580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
CDC45
Motif
Other DBs
NCBI-ProteinID:
AIS07572
UniProt:
V5V9Y3
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All DBs
Position
3063261..3065147
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AA seq
628 aa
AA seq
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MSDMHSPTSQVAALISRGKEQGYLTYAEVNDHLPDSITESEQIEDIIQMLQDVGIPVHER
APESDDTMFGESADATDEVAEEEAAAVLASVENEPGRTTDPVRMYMREMGTVELLTREGE
ISIAKRIEEGIRDVLNSIAYWPNAVEVVLKEYNDFLTGERRLADILSGYLDPETDEDIPE
VLEDVEELEEEDESSTKSTKEVKLDDDDEEEESEGDDDSEGDSGPDPEVAKVRFAELEAA
WAQTKAVIEKHGRNSPEANEALESLATVFMMFKFTPRLFDIISEMIRGTHEQIRANEREI
MRYAVRRGRMDRNQFRTSFPKQESNPAWLDEQIAKAPAEIKAHLEKVRPDVLAFQQKIAD
IEKELGLNVSEIKDISKRMAIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ
EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKINRV
SRQLLQEMGREPTPEELGERLEMDEVKVRKVLKIAKEPISMETPIGDDEDSHLGDFIEDQ
NITSPIDAATSEGLKEATREVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRER
IRQIEAKALRKLRHPSRSEHLRSFLEND
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgagcgatatgcattcccctacttctcaagtagcggctctgattagccgaggcaaagaa
caaggttacttaacttacgctgaggttaacgatcatctgccggactcgattactgaaagc
gaacagattgaagacatcatccagatgcttcaagacgttggtattcctgtacacgagcgt
gcacctgaatctgacgataccatgttcggcgaatcagctgatgcaactgatgaagttgct
gaagaagaagctgctgccgtacttgcatctgttgaaaatgagcctggacgtacgacagac
cctgtacgtatgtacatgcgtgaaatgggtacagtagaactgttaacccgtgaaggtgaa
atcagcattgctaaacgtattgaagaaggcattcgtgatgtcttgaactcaatcgcttac
tggccaaatgctgttgaagttgtattaaaagaatataatgattttttaactggcgaacgc
cgtcttgccgatatcttatctggttatttagaccctgaaactgacgaagatattccggaa
gttttagaagatgttgaagagcttgaggaagaagacgaatcatctacaaagtcaacgaaa
gaagttaagcttgatgatgacgatgaagaagaagagtctgaaggtgatgatgattctgaa
ggtgattcaggtccagaccctgaagttgcaaaagttcgttttgctgaattagaagctgca
tgggctcaaactaaagctgtcatcgaaaaacatggccgtaatagccctgaagcaaatgaa
gctctggagtctttagcaactgtatttatgatgtttaaatttactccacgtttatttgac
atcatttcagaaatgattcgcggaactcatgaacaaattcgtgccaatgaacgtgaaatt
atgcgttatgcagtacgtcgtggtcgtatggaccgtaaccagttccgtacatctttcccg
aaacaggaatctaatcctgcttggttagatgaacaaattgctaaagctccagctgaaatc
aaggctcacttggaaaaagttcgtcctgatgttttagccttccagcaaaaaattgcagat
atcgaaaaagagcttggcctaaacgttagtgaaattaaagatatttctaaacgtatggca
attggtgaagccaaagctcgtcgtgcgaaaaaagaaatggtagaggccaaccttcgtttg
gtaatttcgattgcgaaaaaatataccaatcgtggtttacagttccttgacttgattcaa
gaagggaacattggtttgatgaaagccgtagacaagtttgaatatcgtcgtggttataaa
ttctcaacttatgcgacttggtggattcgtcaggcaattacccgttctattgccgatcag
gcccgtacaattcgtattcctgtacacatgattgaaacgattaacaaaattaaccgtgta
tcgcgtcaattattacaggaaatgggccgtgaacctactcctgaagagttaggcgaacgc
ttagaaatggatgaggttaaagttcgtaaggttcttaaaattgcgaaagagccaatttca
atggaaactccaatcggtgatgatgaagattcgcatcttggggattttattgaagaccag
aacatcacttctccaattgatgctgcgacttcagaaggcttaaaagaagcaactcgtgaa
gttttagaaaacttaactgaacgtgaagcaaaagtattgaagatgcgttttggtattgat
atgccaaccgatcatactttagaagaagtaggtaagcagtttgatgtaacacgtgagcgt
attcgtcagattgaagcgaaagcattgcgtaaattacgtcacccttctcgttctgaacac
ttgcgttctttcctagagaatgactaa
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