Aliarcobacter butzleri 7h1h: A7H1H_0413
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Entry
A7H1H_0413 CDS
T02755
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
abl
Aliarcobacter butzleri 7h1h
Pathway
abl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
A7H1H_0413 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abl03400
]
A7H1H_0413 (mfd)
Enzymes [BR:
abl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
A7H1H_0413 (mfd)
DNA repair and recombination proteins [BR:
abl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
A7H1H_0413 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
SNF2-rel_dom
Cas3-like_C_2
AAA_30
Motif
Other DBs
NCBI-ProteinID:
AGR76737
LinkDB
All DBs
Position
409856..412843
Genome browser
AA seq
995 aa
AA seq
DB search
MKNIYEFLKNLKDEKRLKECQLLIVNDDRQAQIASDIVSYLGFKPFLLADFRANFGDDLL
SFSEELHEITKTLGDFYSYKKQDKILISPIRTISYPLPKEKCFESFTINFADRLNLEELK
SKLYNWGYYFVDIVTSEGEVSLRGDILDICPLGSDFGYRVSLFDDEVESIRKFDIEDQKS
SKEEIESFSINPAFLALDEATFEEINEQIQTVSSDAFIKDIHSLGFWYLGELGEYLPQKM
SSFITQDALDELEEVYVFEEKRVNKDKFLLTPQIYNSKNYQEINPANIKEFISFHNDKKI
TIISGSEAKVKGYDLDLSDKNINYVFENYILNLVSNDEVIISLNKEVKKRRKKKVKLVLD
ELQYNDFVVHEKYGIGQYKGIEPVTVMGAKRDFVIIQYQGEDKLLVPVENLDLIDRYVAD
GSSYAVVDKLGKGSFAKLKEKVKDKLFAIANDIIKLAAARELVNGIKINTDKKVLEDFQK
SAGFEYTKDQKRSIKEIFDDLSSGRVMDRLLSGDVGFGKTEVAMNALLAVILDGYQTIFV
CPTTLLATQHYHSIQKRLESFGIRVAKLDGKTTAKEKTSIKKGLENGDIKLVIGTHSLLD
IKTSNLALVIIDEEHKFGVKQKEKLKQLREDVHIFSMSATPIPRTLNLALSKLKGMSSLL
TPPSERLGVRTYVKEYSEKLIKEIILREKRRGGQLFYVHNNIASIEAKKKDIEAIVPNIK
IDIIHSQIKPEQAEKIIEAFENKEFDILLATSIVESGIHLPNANSIIIDGANRFGIADLH
QLRGRVGRSNKEGYCYYVVEDKKSITDDAVKRLVALESNSYLGSGTALAHQDLEIRGGGN
IIGEAQSGHIKQIGYGLYLKMLEDTLATLSGDEKSEKKTVDIKLAISAYISDEYISEDRV
RLELYRRLSKASDIQEVYSIEEEMEDRFGKPDIVTKQFIELIIIKILALKLGIQTISSYE
MNITFTKADDTKESIKSPSKDDDDIINTTLRYLRK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaaatatttatgaatttttaaaaaatttaaaagatgaaaaaagattaaaagagtgt
caacttttaatagtaaatgatgacagacaagctcaaatagcttctgatatagtctcttac
ttaggatttaaaccttttttattagctgattttagagcaaattttggagatgacttactt
tcctttagtgaagaactacatgaaataactaaaactttaggtgatttttattcatacaaa
aaacaagataaaatcctaatctctccaataagaacaatctcttatcctcttccaaaagaa
aaatgttttgaaagttttactataaattttgcagatagattaaatcttgaagagttaaaa
agtaaactatacaattggggatactattttgtagatattgttacaagtgaaggtgaagtt
tcactaagaggggatattttagatatttgtcctttaggaagtgattttggatatagagta
agtttgtttgatgatgaggttgaaagtatcagaaagtttgatattgaagatcaaaaatct
tcaaaagaagagattgaaagcttttctataaatccagcttttcttgcacttgacgaggca
acttttgaagagataaatgaacaaattcaaactgtttcaagtgatgcttttatcaaagat
attcactctttaggattttggtatttaggagaacttggagagtatttacctcaaaaaatg
agttcatttatcactcaagatgctttagatgagcttgaagaagtttatgtttttgaagaa
aaaagagtaaacaaagataagtttttacttactcctcaaatttacaatagcaaaaattat
caagagataaatccagcaaatataaaagagtttatctcttttcataatgataaaaaaatc
acaataataagtggaagtgaagcaaaagtaaaaggttatgatttagatttaagtgacaaa
aatattaattatgtttttgaaaactatattttaaatttagtctcaaatgacgaagtaata
atctctttaaataaagaagtaaaaaaacgaagaaagaaaaaagtaaaacttgttcttgat
gagttacaatataatgattttgtggtacatgaaaaatatggaattggtcagtataaagga
attgaaccagttactgtgatgggtgcaaaaagagattttgtaattattcaatatcaagga
gaagataaacttttagttcctgttgaaaatcttgatttaatagatagatatgttgctgat
ggaagctcttatgctgttgttgataagcttggaaaaggaagttttgcaaaactaaaagag
aaagtaaaagataaactttttgctattgcaaatgatattatcaaactagcagctgcaagg
gaacttgtaaatggtattaaaatcaatacagataaaaaagttcttgaagatttccaaaaa
agtgcagggtttgaatatacgaaagatcaaaaaagaagtattaaagagatttttgatgat
ttaagtagcggtcgagttatggatagacttctttcaggtgatgttggttttggaaaaaca
gaagttgctatgaatgccttattggcagttattttagacggttatcaaactatatttgta
tgtccaacaacacttttggcaactcaacactatcatagtattcaaaaaagacttgaaagt
tttggaataagagttgctaaacttgatggaaaaacaacagcaaaagaaaaaacaagtatc
aaaaaaggtttagaaaacggagatataaaacttgttattggaacacactctttacttgat
ataaaaacttctaatttagctttagttatcatcgatgaagagcataaattcggtgtaaaa
caaaaagagaaattaaaacaattaagagaagatgtacatattttttctatgagtgcaact
ccaattccaagaactttaaacttagccttatcaaaactaaaaggtatgagttcacttctt
acgcctcctagtgaaagattgggagttcgaacttatgtaaaagagtacagcgaaaaacta
atcaaagagataattttaagagaaaaaagaagaggtggacaactattttatgttcacaat
aacatagcatcaattgaagcaaagaaaaaagatatagaagcaatagttccaaatatcaaa
atagatattattcactctcaaataaaaccagaacaggctgaaaaaatcatagaagccttt
gaaaacaaagagtttgatattttacttgcaacttctattgtagaatcaggaattcacttg
ccaaatgcaaactctattataattgatggtgcaaatagatttggaattgctgatttacat
caacttagaggacgagttggacgaagtaataaagagggatattgttattatgtagttgaa
gataaaaaatcaattacagatgatgcagtaaaaagacttgttgctttagagtcaaactca
tatttaggaagtggaacggctttagctcatcaagatttggaaattagaggtggtggaaat
atcataggtgaagcacaaagtggacatatcaaacaaatagggtatggtttatatcttaaa
atgttagaagatactcttgcaactttaagtggtgatgaaaaaagtgaaaagaaaacagtt
gatataaaactagctatttcagcatatataagtgatgaatacattagtgaagatagagtt
agacttgaactttatagaaggttaagtaaggctagtgatattcaagaagtttatagtatc
gaagaagaaatggaagatagatttggaaaacctgatattgttacaaaacagtttattgag
ttgattatcataaaaattttagctttaaaactaggtattcaaactattagttcttatgag
atgaatattacgtttacaaaagctgatgatacaaaagagagtataaaatcaccatcaaaa
gatgatgatgacatcataaatacaactttgagatatttgagaaaataa
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