Acinetobacter baumannii SDF: ABSDF1493
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Entry
ABSDF1493 CDS
T00660
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
abm
Acinetobacter baumannii SDF
Brite
KEGG Orthology (KO) [BR:
abm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abm03019
]
ABSDF1493 (hrpA)
Enzymes [BR:
abm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ABSDF1493 (hrpA)
Messenger RNA biogenesis [BR:
abm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ABSDF1493 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
PhoH
AAA_30
TsaE
SLFN-g3_helicase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
CAP00836
UniProt:
B0VLI7
LinkDB
All DBs
Position
1398147..1402004
Genome browser
AA seq
1285 aa
AA seq
DB search
MLNGLNIDQWVMARDRYRLNRLRKDKKANTAEIEKLFEQSNAKVRQRFERLPKITLNQDL
PVTQYADRLIEAIQKHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAARS
VSQRIAEEVGEKLGESIGFKIRFNEQGSQDSIVRLMTDGILLAELGNDRFVSKYDTIIID
EAHERSLNIDFIMGYLKQLLPKRPDLKVIVTSATLDVNRFSNYFNNAPIFEVEGRSYPVE
VRYRPISEMNIGGSDDDEFDDFEENLPRAVVQAVEECFADAEEKGHPEHADILIFSSTEQ
EIRELQETLQKYGPRHTEILPLYARLAVSEQQKIFSPSGKGRRIIIATNVAETALTVPNI
RYVIDSGFARISRYNYRSRVQRLPIEAISQAAANQRKGRCGRVAPGVCIRLYSEEDFLSR
PEFTEPEIKRTNLASVILQMQTLGLGELENFDFIEPPDFRLVNDGRKLLIELGALNEKKN
ELTKVGQMMARMPIDPRLARMIVGGAHFGVLKEILVVVSALAVQDPRERPADKQMQADQK
HALFKEADSDFLFYLKLWDTLNPKGEAGMSENKRRQFAKQHFLSWLRLREWKQIHQQLVE
LAEGLKLSFNEKPANYENLHRALLTGLLSFIANKTDERNTFMAVRQQKAKVFPASTLHKT
NTAWVMAFEMVETSQVYLRTLAKIDPEWILLAARDLLKYHYFEPHWSKKAGIVNAYAQIS
LFGLIIEPKRLVNFEKVDQPAAHEIFLRDALTTGNLGTVPPFLKHNLLKLEEVERVEDKL
RRRDLVVDEETIYQFYESKIPEEIASRRSFEDWRATVEAKNPRYLYVEDDALWLNDRPTT
QQFPDHLHNGQLRLATTYRFDPSHDEDGATVQIPVQALPQVDENIWSWGIPGWRLDLIEA
LLKALPKDKRRNLVPIPDTARKLMQGIDAVHLRQHIFSYLAFALRGEQITDKDFSFERID
PYLVPFIKVIDEKGKLIAKGRDLAELKARCRVETHRPVKQQKGEFKTFPENFTFEASQKV
TGVVVKQYQALVPTKNFAELEAKDESGVVIQTFNDQAEAIKQHREGIIRLVHMQLGDLVR
QLKKQISKPLALAYSPLGDKAKLEQMLVYATLQMAITTLPINADEFNKLLDQVKKQFLSY
GQQALEQLGDIYIQWQQIRRQLLVLDPDVFGRSIDDIEDQLDLMSLGNFVYCQPVDLWQE
YPRYLKALLLRLDRLPNNLQRDHAAIDDVDPWMDKVFKFKNDPRIKELYLMLEELRISLF
SQPMKTKMPISPTRLQKLWDRLGIS
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
gtgctgaatggtttaaatatagatcaatgggtgatggcgagagatcgttaccgtttaaat
cgtttacgtaaagataaaaaagccaatactgcagagattgaaaaattatttgaacagtct
aatgcaaaagttagacaacgttttgaacgcttaccaaaaatcacattaaatcaggacctt
cctgtaacccaatatgctgaccgtttaattgaagcgattcaaaagcatcaggtcattatt
gtggctggtgaaacaggttcagggaaaactactcagctccctcaaattgcaatgttagca
gggcgtggcttgactggtatgattggtcacacccagccacgccgtttagctgcacgtagt
gtgtcgcagcgtattgcagaagaagtcggcgaaaagctcggcgagtcaattggttttaaa
atccgttttaatgaacaaggttcgcaagattcgattgtccgtttaatgaccgacggtatt
ttgcttgccgagttaggtaatgaccgcttcgtgtctaaatatgacaccatcattattgat
gaggcgcatgagcgctcactcaatatcgattttattatgggctatttaaagcagttattg
ccaaaacgcccagatttaaaagtcatcgtgacttcggcaactttagatgtaaatcgtttt
agtaactactttaataatgcaccaatttttgaagtagaagggcgtagttatccggttgaa
gtgcgttatcgcccaatttcagaaatgaatattggtggtagtgatgacgatgaattcgac
gactttgaagaaaacctgccgcgtgcagtcgtacaagctgtagaagaatgctttgctgat
gccgaggaaaaaggccatccagaacatgctgatattctgattttctcaagcacagagcaa
gaaattcgagaattgcaggaaaccttacaaaagtacgggccgagacataccgaaatttta
cctttgtatgcacgcttagccgtttctgagcaacaaaagatttttagcccaagtggaaag
ggccgccgtattattattgcgacaaacgttgcagaaactgcactgactgttcctaatatt
cgctacgtgattgatagcggctttgcacgtatatctcgttataactaccgctcacgcgtg
caacgcttaccgattgaggcaatttcacaagctgcagcaaatcaacgtaaagggcgttgt
ggtcgtgttgctccaggtgtttgtattcgtttatatagcgaagaagactttttaagtcgt
cctgagtttaccgaacctgaaattaagcgaaccaacttggcatcggttattctgcaaatg
cagaccttaggtttaggtgagctggaaaactttgatttcattgagccgccagatttccgt
ctagtcaatgatggtcgtaagctactcattgagttaggtgcgctgaacgagaagaaaaac
gaactgaccaaagttggccaaatgatggcacgtatgccgattgatccaagactcgcacgt
atgattgtgggtggggctcattttggtgtactcaaagaaattttggtggtggtcagtgca
cttgcagttcaagacccgcgtgaacgtccagcagataaacagatgcaagctgatcaaaag
cacgcattattcaaagaggcagattcagattttctgttttatttaaaactttgggatact
ttaaatcctaaaggtgaagcaggaatgtcggaaaataagcgtcgtcaatttgctaagcag
catttcttaagctggttacggttacgtgaatggaaacagatacaccagcagctggttgag
ctggccgaaggtttaaaacttagttttaatgaaaagcctgcaaattatgaaaacttgcac
cgtgcgttgctgaccggtttattgtcttttattgccaataagactgatgaacgtaatacc
tttatggcagtacgtcagcaaaaggcaaaagtttttccagccagcacattgcacaaaacc
aatactgcgtgggtgatggcttttgagatggtggaaacctctcaagtctatttacgtaca
ttagcaaaaattgatcctgaatggattttgcttgctgcacgcgacttattgaaatatcac
tatttcgagccgcattggtctaaaaaagccggtattgtaaatgcttatgcacaaatttca
ttgtttggtttaattattgaaccgaagcggttggttaattttgagaaagttgatcaacct
gctgcacatgagattttcttacgtgatgcattaaccacaggaaatttggggacagttcca
ccatttttaaaacacaacttgcttaaacttgaagaagtagagcgagttgaagataaatta
cgtcgccgcgatttggtggtcgatgaagaaacgatttatcagttctatgagtcgaaaatt
cctgaagaaattgcgagtcgtcgtagttttgaagactggcgtgcaactgtagaagcaaaa
aatccgcgttatttatatgtagaagatgatgcgctttggctcaatgaccgtccgaccacg
cagcaattccctgatcatttacataatggtcagttacgcttggcaactacttatcgtttt
gacccaagtcatgatgaagatggcgcaacggtccaaattccggtacaggcattgcctcag
gtagatgaaaatatttggtcgtgggggattccaggctggcgtttagatctcattgaagcc
ttattgaaagccttaccaaaagataaacgtcgtaacctcgtaccgatcccagatacggcg
cgtaagctcatgcaaggtattgatgctgtacatttgcggcaacatatttttagctatctg
gcgtttgctttacgtggtgagcagattacggataaagatttttcatttgaacgcatagat
ccgtatttggtgccttttattaaggtgattgatgaaaaaggtaaattgatcgccaaaggc
cgtgacttggctgagttgaaggctcgttgtcgcgtagaaacgcatcgtccggtgaaacag
caaaaaggtgaatttaaaaccttccctgaaaactttacctttgaagcttcacagaaggtg
acaggtgttgttgttaaacaatatcaagctttagtaccaactaaaaattttgccgaactt
gaggcgaaagatgagtctggcgtagttatacaaacatttaacgatcaggcagaggcgatt
aaacagcatcgcgaaggtattattcgtctggtccatatgcaacttggcgatttggttcgc
cagttgaaaaagcagatttcaaaaccgcttgcgttggcttattcacctttaggcgataaa
gctaagcttgagcagatgttggtctatgcaacgttgcagatggcaattacgactttgcca
attaacgctgatgaatttaataagctgctagatcaggtcaaaaagcaatttttgagttat
ggtcagcaagcacttgagcaattaggtgatatttatattcagtggcaacaaatccgtcgt
caacttttagtacttgatccggacgtatttggacgcagtatcgatgatattgaagatcag
ctagacctcatgtcacttggcaattttgtctattgtcagccagttgatctttggcaggaa
tatccacgttatttaaaagcgctgctattgcgtttagatcgattgccaaataatctacag
cgagatcatgctgctattgacgatgtcgatccatggatggacaaggtatttaagttcaaa
aatgatccaagaatcaaagaattgtatttgatgctggaagaattacgtatttctttattt
tctcagccgatgaaaaccaagatgcctatttcgccaactcgactacaaaagttatgggat
cgtttgggaatcagttaa
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