Acinetobacter baumannii SDF: ABSDF3110
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Entry
ABSDF3110 CDS
T00660
Symbol
rne
Name
(GenBank) ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
abm
Acinetobacter baumannii SDF
Pathway
abm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABSDF3110 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abm03019
]
ABSDF3110 (rne)
03009 Ribosome biogenesis [BR:
abm03009
]
ABSDF3110 (rne)
Enzymes [BR:
abm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABSDF3110 (rne)
Messenger RNA biogenesis [BR:
abm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABSDF3110 (rne)
Ribosome biogenesis [BR:
abm03009
]
Prokaryotic type
rRNA processing factors
ABSDF3110 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAP02390
UniProt:
B0VLC2
LinkDB
All DBs
Position
2862771..2866103
Genome browser
AA seq
1110 aa
AA seq
DB search
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY
GAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISL
AGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQL
DLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYN
FVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSID
INSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKL
REATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSI
MRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHY
EIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAAAQKKA
NHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQ
FGQVAVPAVAEVAPVQSNNAYISQSPVKQDVREHVEKDDKSQQQRQNNKKRKHKEQREQH
HQSHEQQHQVHEEVVQLSRQEQRELKRQQKRQQQQDQQHQNNDVQHTENAVPRRDRNNQQ
RPNRPNRHRDPSVLNENQNTPVVVDEKQIKVDVIDAPKHDVMNTALIINVDQGQSEIVAL
TPERRHVERVETTSTEVAQEPTPAPVVAEKAAVVETKEEAQPSQEAAQPQIKRASNDPRM
RRRQQREAKHAKAATPSIAPSQIPTLAQHTIGSLIRHVYGEDCTVLIEQFGLVPTFNRAL
QKFAEQYASTLVVEVTAETEEKKPVTRDAELPSHKPAEEAEPAPVLPLTPPQAPAPRVAN
DPRERRRLAKLAAEQAFEQVKQQHSAQEEVATPAPVAEETVAAPTAETQATVEPAQQPLE
LNQSTEVVQPEAAPAEEKATEETVAEAPAAKEPTPSKAASKAKAAAEETVAPTEATTDAE
SEDVKADKDKPSRPRRPRGRPPKKANPVAE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgttgattaatgcaactcatgccgaagaagttcgcgttgcacttatcact
ggtaatcgtctttacgattttgatttagagaatcgtacccgagaacagaaaaaatccaat
atctataaaggccatgtcacccgcgtagaaccatctttagaagctgtttttgttgaatat
ggcgcaggtcgtcaaggcttcttgtctatgcgtgaaattgctaacagctattttcaggca
gacccacgtcaaacttcaaacattcgtgaacttattactgaaggcacagagcttttagtt
caggttgaaaaagaagaacgtggtaataaaggtgcagcactttctacgtttatttccctt
gcaggccgttatttagttcttatgccaaataacccgaaaggtggtggtattagccgtcaa
atttcaggttcagtacgtgaagaattaaaagaaattttagcttctttaaatgtacctcgt
ggtatgagcgttattgttcgtactgctggtattgggcgtactcaagaagaattacagctc
gatttacaacacttgcttgacctttgggcacaaattcaaggtacagcgagctcaggccct
tctccgatgcttgttcatcaagaagcgggtgtagtaacacgtgcaattcgtgattactta
cgtgatgacgttgctgaaatcttaattgatagcgaacaggcttataacgaagcatataac
tttgttaaagcagtgatgcctcgccaattagacaaattaaaaacttatactttaaacgag
ccattgtttgctcattttggtattgaaagccaaattcaaactgcttacgagcgtgaagta
aaacttccttctggcggttcaattgtgattgaccagactgaagctttagtttcaatcgat
attaactctgcgaaatcgactcgtggacatgatgttgaagaaactgcactgaatactaac
cttgaagcagcagaagaaattgctcgccagcttcgtttacgtgacattggcggtttagtt
gttatcgacttcatcgatatgactaaagaacgcaatcaacgtatggttgaagcaaaactt
cgtgaagcaacacaaagcgatcgtgcccgtatccagttcggtcaattgtctcgttttggc
ttaatggaaatgagccgccaacgcttacgtccatcgcttgaagaagcaacaggttatgta
tgccctcgctgtcatggtacaggcatggttcgtgacttacgttcgctttctctttcaatt
atgcgtaaagttgaagagattgcacttcgtgaacgtcatggtgaagttcaggttgaagtt
ccagttgaaattgcagccttcttgcttaatgaaaaacgccatagtctggtgtatttagag
caaacttctggtgtacgtgtgactgtattaccacacccacacttagaaactccacattac
gaaattgcatataacccagatggctttgctccatctagctatgaacgtacagaagcaacc
cgttctagcgagaaagagttaggttatgagtcttctgaatggcatttagaagaagcagat
catggccatgctcatgtaactgctacagcttcaactcatgctgcggctcagaaaaaagca
aatcatgcaactcaacctgtagcacaaccttctgctcaaaaagcggcaagcccttgtgca
tggttagaaaacctgtttgttcaaaaacaagcgcaaacagttgatcaatctcgttcagca
caaaatgctgctgctgcgattgagcaaatggtgaatacaggcgcagtaagccgcggacag
ttcggtcaagtagccgtacctgctgttgcagaagttgcgccagttcaatcaaataacgct
tatatttcacagtcacctgtgaaacaagacgttcgtgaacatgttgaaaaagatgataaa
tctcagcaacaacgtcagaacaacaaaaagcgtaaacataaagagcaacgtgaacaacat
caccaatcacatgaacagcaacatcaagttcatgaagaagtggttcaattgtcacgccaa
gaacaacgtgagttaaaacgtcagcaaaaacgtcaacagcagcaagatcagcaacatcaa
aataatgatgtacaacacactgaaaatgctgtgccacgtcgtgaccgtaataatcaacaa
cgtccaaaccgtccaaatcgccaccgcgatccaagtgtattaaatgaaaatcaaaataca
ccggttgttgttgatgaaaaacaaattaaggttgatgtgattgatgcacctaagcatgat
gtcatgaacactgctttaatcatcaatgttgatcaaggtcaaagtgagattgttgcactt
acacctgagcgtcgtcacgttgagcgagttgaaacgacttctactgaagttgctcaagag
ccaactccagctcctgttgtagccgagaaagctgctgtagttgaaaccaaagaagaagct
cagccaagccaagaagctgctcagccacaaatcaaacgtgctagcaatgaccctcgtatg
cgtcgtcgtcagcaacgtgaggctaaacacgctaaggcagctacgccatctattgcgcca
tcgcaaattccaactttggcacaacacacaatcggtagcttaatccgtcatgtgtatggt
gaagattgcaccgtattgattgaacaatttggtctagtcccaacgtttaatcgtgctttg
cagaaatttgcagaacagtatgcaagtacgttagtagttgaagttactgctgaaacggaa
gagaaaaagccggtaactcgtgatgcagaacttccaagccacaaaccggctgaagaagca
gaacctgcaccagtacttccgcttactccgccgcaagcaccagctccacgtgttgcaaat
gacccgcgtgagcgtcgtcgtttagcaaaacttgctgcggaacaagcatttgagcaagtg
aaacaacaacattctgctcaagaagaagttgcaactcctgctcctgtagcagaagaaacc
gttgctgctccaactgctgaaacacaagcaacagttgaaccagcacaacaaccgcttgaa
cttaatcagtcaactgaagtcgtacaacctgaagctgctcctgcagaggaaaaagctaca
gaagaaacagtagctgaagctcctgcagcgaaggaacctacgccatcaaaagcagcaagc
aaagcaaaagcagcggctgaagaaacagtagctccgactgaagcaacaactgatgccgaa
tcagaagacgttaaggcagataaggacaaaccgagccgccctcgtcgccctcgtggccgt
ccgccaaaaaaagctaatcctgtagctgagtaa
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