Alcanivorax borkumensis: ABO_0422
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Entry
ABO_0422 CDS
T00380
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABO_0422 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abo03021
]
ABO_0422 (rpoA)
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_0422 (rpoA)
Enzymes [BR:
abo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABO_0422 (rpoA)
Transcription machinery [BR:
abo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABO_0422 (rpoA)
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABO_0422 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
RNA_pol_L_2
HHH_XRCC3_RpoA
Motif
Other DBs
NCBI-ProteinID:
CAL15870
UniProt:
Q0VSH8
LinkDB
All DBs
Position
460727..461734
Genome browser
AA seq
335 aa
AA seq
DB search
MTAVNDFLTPRSIAVNAINQTHAKVVLEPLERGFGHTLGTALRRILISSMPGCAITEVEI
DGVQHEYSSIEGVQEDVINILLNLKGVALKMEDSEETTLELVKKGPGVVTANDIQRDHSV
EIVNPDHLICTITGDTELRVKLKVQKGRGYVAADSRQSEDDETRGIGRLQLDASYSPVRR
VAYVVEAARVEQRTDLDKLVIDLETDGTIEPEEAIRRAATILQQQIAVFVDLEQDAKPEP
KQEREEIDPILLRPVDDLELTVRSANCLKAENIYYIGDLVQRTEVELLKTPNLGKKSLTE
IKDVLASKGLSLGMRLENWPPVSLRDDDRLNAKLR
NT seq
1008 nt
NT seq
+upstream
nt +downstream
nt
atgaccgccgtgaacgactttctcacgccccgctcgatcgcggtcaacgcgatcaaccag
actcacgctaaagtggttctggaaccgctggagcgtggttttgggcacaccctggggact
gcgctgcgccgcatcttgatctccagcatgcctggctgtgcgatcaccgaggtggaaatc
gacggtgtgcagcatgaatactcttccattgaaggggtgcaagaagatgtgatcaatatt
cttcttaacctcaaaggcgttgccttaaaaatggaagatagcgaagaaacgacccttgag
ctggtcaagaaaggtcctggtgtcgttaccgcgaatgatatccagcgtgatcacagcgtt
gagattgttaacccggatcacctgatctgtacgattactggcgacaccgaactgcgtgtg
aagctgaaagtacagaaaggacgcggttatgtcgcagcggattcccgtcagtctgaagat
gacgaaacccgcggaattggccgtctgcagctggatgccagttacagcccagttcgtcgt
gtcgcgtatgtggtcgaagcggcacgcgttgagcagcgtactgatttggacaagctggtc
attgatctggaaacagacggaaccattgagccagaagaagcgattcgtcgtgcagcaaca
attctgcagcagcaaattgcggtgtttgtagatttggaacaggatgccaagcctgagccg
aagcaagaacgtgaggagatcgatcctatcttgctacgcccggttgatgatcttgagcta
acggttcgctccgctaactgtttgaaagcggaaaacatctactacatcggtgatctggta
cagcgtaccgaggtcgagctgctgaaaaccccgaacttgggtaagaagtcgctgaccgag
attaaagatgtgctggcctctaaagggctttcactgggtatgcgtctggagaactggcca
ccggtcagccttcgcgacgatgaccggttgaacgccaagttgcgctaa
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