Alcanivorax borkumensis: ABO_1012
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Entry
ABO_1012 CDS
T00380
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
abo
Alcanivorax borkumensis
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abo03032
]
ABO_1012 (topA)
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_1012 (topA)
Enzymes [BR:
abo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
ABO_1012 (topA)
DNA replication proteins [BR:
abo03032
]
Prokaryotic type
DNA Topoisomerases
ABO_1012 (topA)
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
ABO_1012 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF2399
DUF4358
Toprim_4
tRNA_synt_1c_R2
Motif
Other DBs
NCBI-ProteinID:
CAL16460
UniProt:
Q0VQT8
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All DBs
Position
1148680..1151409
Genome browser
AA seq
909 aa
AA seq
DB search
MGKSLVIVESPAKAKTINRYLGDDFIVKSSVGHVRDLPVSGGSKKSTPQERAKEAAYTRS
LPKEERDAYKKKKAKKQLINRMGIDPENGWAAHYEVLPGKDKVVDELKRLAAKADRIYLA
TDLDREGEAIAWHLREVIGGDEERFDRVVFNEITKKAIQAAFEEPGKLDLHRVEAQQARR
FLDRVVGFMISPLLWEKIARGLSAGRVQSVAVELVVEREREIRAFIPEEFWELYSDTHSG
DGEALRLQVAKHNGLAFRPNNGDDAAAHKQALENAGRLTISQREQRPTRSKPSAPFITST
LQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSSDAVAACREWIGEKLGDKYL
PDEPLSYSSKEGAQEAHEAIRPSDVRRTSDSLKDMERDAQRLYELIRRQFIACQMPPAEY
LSSTLTAIGNGYELKAKGRIMKFDGWTRIQPPASRKGQEDTLLPDVKEGDVLAIDNVDAN
QHFTKPPARFTEASLVKELEKRGIGRPSTYAAIISTIQDRGYVRQDNRRFYAEKMGDIVT
DRLVESFPNLMDYGFTASMEETLDEVAEGRRNWQDVLNEFYKDFVSKLDAAQGEGTGKQA
VGGMRANLPTDTDIECPSCGRPMQIRTGSTGVFLGCSGYALPPKERCTATLNLLPGEEAE
AVKTDDDEEAETNELRSKKRCQKCGTAMENYLIDEKRKLHICGNNPDCDGYVIEKGEFRI
KGYDGPVLECEKCGNDMQLRTGRFGKFFKCTNDECGNTRKLLKSGEPAPPRADPIPMPHL
QCQKVDDHYLLRDGASGLFLAASKFPKNRETRPPLIEEIQSVAEQLDPKHAYLAQAPATD
PDGNKGVLRYSRKAKEQYVMSEIDGKATGWMAFYRDGKWVEEQAKKKAPAKKKAAAKKKA
TKKKAAAKK
NT seq
2730 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaatcgttagtaattgtggagtcgcctgccaaggcaaaaaccattaaccgctac
ctgggcgacgacttcatcgtgaagtccagcgtcggccacgtgcgcgacctgccggtcagt
ggtggctccaaaaaaagcacccctcaagagcgggccaaggaggcagcctacacgcgctcc
ttgcccaaggaagagcgggatgcctataaaaagaagaaggccaagaagcagctgatcaat
cgtatggggatcgatccggaaaatggctgggccgcccactatgaagtgctccccggtaag
gacaaggtggttgatgagctcaagcgcctggctgcgaaagcagaccgcatctatctggca
acggatttggaccgcgaaggggaggctattgcctggcacctgcgggaagttatcggtggc
gatgaagagcgcttcgaccgggtggtgttcaacgaaattaccaagaaagccattcaggcg
gctttcgaagaacccggcaagctggacttgcaccgggtagaagcccagcaggctcgtcgc
ttcctggatcgggtggtgggcttcatgatttccccgctgctgtgggaaaagatcgcccgc
ggattgtctgccggtcgggttcagtccgtagcggtggagttggtagtggagcgtgagcgt
gaaatccgcgcttttatcccggaagaattctgggagctttacagcgatacccacagcggc
gatggtgaagccctgcgtttgcaggtggcaaagcacaacggtttggcgttccgccctaac
aacggcgacgatgccgcggcgcacaagcaagctctggaaaatgccggccgcctgaccatc
agtcagcgcgagcaacggccgacccgttccaagccttccgcgccgtttattacctctacc
ctacagcaggcggccagtacgcggctgggcttcggggtgaaaaagaccatgatgatggcg
caacggctttacgaagccggccacattacctacatgcgtaccgactccaccaacctgagt
tccgatgcggtggcagcctgccgggaatggatcggcgaaaagctgggggataagtatctt
cccgacgagccgttgtcttacagcagcaaggaaggggcccaagaagcgcacgaagcgatt
cgtccttctgatgtacggcgtacctccgattccctgaaagatatggaacgcgatgcgcaa
cgcctttatgaattgattcgccgtcagtttattgcctgccagatgcccccggcggaatac
ctcagctccacgctgacggccatcggcaatggctatgagctgaaagcgaaagggcgcatc
atgaagttcgatggttggactcgcattcagccgccggcctcgcgcaagggccaagaagac
accttgctgccggacgtgaaagaaggcgatgtgctggccatcgataatgtggacgccaac
cagcatttcaccaaaccgccggcgcgctttaccgaagcaagcctggttaaggaactggaa
aagcgaggcattggtcgcccgtctacctacgcggcgattatctccaccattcaggaccgt
ggctacgtgcgtcaggataaccgccgtttctatgcggaaaagatgggcgacatcgtcact
gaccgtctggtagagagcttccccaacctgatggactatggctttaccgccagcatggaa
gaaaccttggatgaggttgccgaagggcggcgtaattggcaggacgtgctcaacgagttc
tacaaagactttgtgagcaaactggatgcagcccaaggtgaaggcactggcaagcaggca
gtgggcggcatgcgagccaacctgcctaccgacaccgatatcgagtgccctagctgtggc
cgcccgatgcagattcgtaccggctccaccggagtgttcctgggctgttctggttatgct
ttgccgccgaaagagcgctgcaccgcgacactaaacctgttgcctggtgaagaagcggaa
gcggtgaaaacggatgatgatgaagaagcggaaaccaatgaattgcgtagtaagaagcgt
tgtcagaaatgtggcaccgcaatggaaaactacctgatcgacgaaaagcgcaaattgcat
atttgcggtaataacccggactgcgacggttatgtgatcgagaagggtgagttccgtatc
aagggttatgatggcccggtgctggaatgtgagaagtgcggcaatgatatgcagttgcgc
acagggcgttttggcaagttcttcaaatgcaccaatgatgagtgtggcaatacccgcaag
ctgcttaagagcggcgagccggcaccgccacgagccgacccgattcctatgccgcacctg
caatgccagaaggtggatgatcattatctgttgcgtgacggtgcctctggcctgtttctg
gccgccagcaagttccccaaaaatcgggaaacgcggccgccactaatcgaagaaattcag
agtgtggccgagcagctggatcccaaacatgcctatttggcccaagcgcctgctacggac
ccggacggcaataaaggcgtgctgcgctatagccgcaaggccaaagagcagtatgtgatg
agcgagatcgacggtaaggctaccggctggatggcgttctatcgtgatggcaaatgggtc
gaggaacaggccaagaaaaaagcccccgcgaaaaagaaagccgcggccaagaaaaaggcc
acgaagaaaaaagccgcggccaagaagtaa
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