Alcanivorax borkumensis: ABO_1060
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Entry
ABO_1060 CDS
T00380
Symbol
rne
Name
(GenBank) phosphoric diester hydrolase
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABO_1060 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abo03019
]
ABO_1060 (rne)
03009 Ribosome biogenesis [BR:
abo03009
]
ABO_1060 (rne)
Enzymes [BR:
abo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
ABO_1060 (rne)
Messenger RNA biogenesis [BR:
abo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABO_1060 (rne)
Ribosome biogenesis [BR:
abo03009
]
Prokaryotic type
rRNA processing factors
ABO_1060 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAL16508
UniProt:
Q0VQP0
LinkDB
All DBs
Position
complement(1201361..1204585)
Genome browser
AA seq
1074 aa
AA seq
DB search
MKRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDF
GAERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGALNIPDEMGVIVRTAGLGRSAEE
LQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDE
AQGFVQQVMQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEALV
SIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDVE
NRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSLA
LSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNHKVRVVIIPNQNLDT
PHFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKTQEPAVRLMAPDTAPPPPK
PVVAAPTAQVQNLGLLARLFSWLAQVFTAEPKPAKAKKDAPQRKSDNKPRQQQNNRGRGG
NNRNDSNNSDNRAKNDNRNKRDGGKAGDNDNRNTRNKRQNDKDSGRKNDNRQADNRAADN
RNDGRADTKDDGNRNERRGRNDNRRNNRNNDSRGEGRNDNRNGNRNDNKPDSKVSEGAKP
RTRKQDNAADGADSKSSDKGPKAPRRTDAKDNRPLRERQRPNKANNSDGGVAQPAKAQRT
AAPKPPRNEQPAPVDDEGHPATKLVPAQEPSAQAKRDDTPKKAATDKTAPLNEQSPVTNQ
PQAAAEPKQEQTVAPAKVQQPAAEQPPVTKAPVAQTTAAPKVEDDKPASAQPTASDTTTA
APAQEQPTPTADSTPQQPKADTPKAASTDDKPAPSAPQQAATTNAAPVAAQPATAAPTQT
PAPAKPAEENKSEEKPVTAEPAAPSRASNDPRSPGYKPTPVAPAPKVEEKPKPAPASNEL
PSRATEVKAVKAEAKPAAAEQGRASNDPRQRRREQLAAQEATAKAQQTESPSDD
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgcttattaacgccactcaccctgaagaagtacgggtggcactggtcgac
ggacaacgtctgtatgacctggatatcgaacaccgcacgcgggaacaaaaaaaagccaac
atttataaaggcaagatcacccgggtagaaccgtccctggaagccgcctttgtggatttt
ggcgcagagcgccatggctttcttcccctcaaagaaatttcccgccagtacttccaaaaa
gatcccaaggacatccagggccgcattaacatcaaggaagtcatcaaggaaggccaagaa
gttattgtccaggtggccaaagaagagcggggcaacaaaggcgccgccctcaccaccttt
attagcttggcgggtcgctatttggtgctaatgcccaataatcctcgcgccggcggcatt
tcccgccgtatcgaaggggaagagcgggctcagctgaaagaagccctaggcgccctgaac
atccccgacgaaatgggggttatcgtgcgcaccgctgggctgggccgcagtgctgaggaa
ttacagtgggacctgaactacctactgaaactgtggacctccatcgacgatgcctcacag
gatcgcaaggcacctttcctgatctatcaggaatccaacgttatcatccgcgccattcgt
gactacttgcgcaaagatatcggcgaagtcctgatcgattccaagaaagtttatgatgaa
gcccaaggtttcgttcagcaggtaatgcaggacttccagcacaaaatcaaactgtacgac
gacgaaaccccactgttctcccgtttccagattgagtctcaaatcgaaaccgcctttgag
cgggaagtgaagttaccctccggtggctcaatcgtgatcgacccgacagaggccttggtg
tccatcgacatcaactcctcccgcgccaccaaaggcgcagacatcgaagagaccgctctg
cagaccaacctggaagcggcggaagaaattgcccgccagctgcgcctgcgtgatatcggc
ggcctgatcgtggtggatttcatcgacatgggcccggcacgcaaccagcgcgacgtggaa
aatcgcatgcgcgatgccctggaagcagaccgtgcccgcatccagttaggccgcatctcc
cggtttggtttattggagctgtcccgtcagcgcctgcgcccgagcctgggtgaaacgtcc
agtatcgtttgtccgcgttgtgatggccaaggccacatccgtgatgtgaagtccctggcg
ctgagcatccttcgtcttatcgaagaagaagtgatgaaagagcgcaccggcgaaatccaa
gcccaagtaccagtagccgtggccacctacctactcaatgaaaagcgtgatccgctacgc
gccattgagaagaaccacaaagtgcgggtagtcattatccccaaccagaacctggacacg
ccccactttgaagtggaacgcatccgagatgaccaaacgtccacccagctgagccatgag
atggatctgctggaaggcaccaaggatgcagatattgcttccgctcaagacactgaaatt
aaaacccaagagccggccgtcagactaatggcaccggatactgccccgccgccgcccaaa
ccggtcgtcgcggccccgactgcgcaagtgcaaaatctgggattgcttgcccgcctattc
tcttggttggctcaagtgttcaccgccgaacccaaaccagccaaggcgaagaaagacgcc
ccccaacgcaaaagcgacaacaagcctcgccagcaacaaaacaatcgtggccgtggcggc
aacaaccgcaacgacagtaataacagcgataaccgcgctaagaacgataaccgcaacaag
cgtgatggcggcaaagccggtgataacgacaatcgcaacacccgcaacaagcgtcaaaac
gacaaagatagcggtcgcaagaatgataaccgtcaagcggacaatcgcgctgccgacaac
cgcaacgatggccgagccgataccaaggatgacggcaaccgtaacgagcgccgtggtcgc
aatgacaaccgtcgtaacaatcgcaacaacgacagccgtggcgaaggtcgcaatgacaac
cgaaacggtaaccgtaacgacaacaagcctgatagcaaggtaagcgaaggagccaagccg
cgcacccgtaaacaggataacgccgctgatggtgctgacagcaaaagcagcgacaagggc
ccgaaagccccccgccgcaccgatgccaaggacaaccgtcccttgcgcgagcgacagcgc
cccaacaaagctaacaacagcgatggtggcgtagctcaaccggccaaagctcagcgcact
gcggcccctaagccgccacgcaacgaacagccggcacctgtggatgacgaaggtcacccg
gcgaccaagctggtaccggcgcaggaaccttccgcacaagcgaagcgcgacgataccccc
aaaaaggcagcgacagacaagacggcaccgctcaacgagcaatcacccgttaccaaccaa
ccgcaagccgcagctgaaccgaagcaggaacaaaccgttgctccggccaaggtacagcaa
cctgctgctgaacaaccgcccgtcaccaaagccccggttgcgcaaaccaccgccgcacca
aaagtcgaggacgacaaacccgccagcgctcagcccacagccagcgacaccaccaccgct
gctccggcgcaggaacaaccgaccccgaccgccgacagcacgcctcagcagcccaaagct
gatacccccaaagcggccagcactgacgacaagccggcgccctctgcgccacagcaagcg
gcaaccaccaacgccgctccagtagccgctcaaccggcaacagccgcaccgacccaaact
ccagctccggccaagccagctgaagaaaataagtcagaggaaaaaccggtcaccgccgag
ccggcagcaccaagccgtgccagcaatgacccgcgctctccaggctacaaacctacccct
gtcgctccggcgcccaaggtagaagaaaagcccaaaccagcaccggccagcaatgagcta
cccagccgtgccaccgaagtgaaagccgtcaaagcagaagctaagccggccgccgcggaa
cagggccgagccagcaacgacccgcgccaacgccgccgtgagcagctcgctgctcaggaa
gccactgccaaggcgcaacaaacggaatctccttcagacgactga
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