Alcanivorax borkumensis: ABO_1158
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Entry
ABO_1158 CDS
T00380
Symbol
dnaE
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03030
DNA replication
abo03430
Mismatch repair
abo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABO_1158 (dnaE)
03430 Mismatch repair
ABO_1158 (dnaE)
03440 Homologous recombination
ABO_1158 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abo03032
]
ABO_1158 (dnaE)
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_1158 (dnaE)
Enzymes [BR:
abo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABO_1158 (dnaE)
DNA replication proteins [BR:
abo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABO_1158 (dnaE)
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABO_1158 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
CAL16606
UniProt:
Q0VQE2
LinkDB
All DBs
Position
1315116..1318616
Genome browser
AA seq
1166 aa
AA seq
DB search
MTDPRFVHLRLHTDYSLVDGIVRVKELTKTCVNEQIPAVAVTDDSNLFALIKFYQNAMNA
GIKPLMGADLWVQGTHIDEPAYLSFLVLNEVGYQNLTLLISRAWQTNQDRGRALVKPEWL
AELNEGLIVLSAASQGEVGQLLLAGKHEQAQQYARWLVSTYGDRFYLEVQRTSRPGDEDC
LHASVALAEQLGLPVVATNDVRFLRREDFEAHESRVCIHDGNTLDDPRRPKKYSEEQYLK
SADEMAQLFSDLPEALENTVEIARRCTLDIRLGENFLPDFPIPEGMTIEQYFEKVSHDGL
EERLKVLLDSDDPEYALKRKDYDDRLRFELDIINQMGFPGYFLIVADFIQWAKDNEVPVG
PGRGSGAGSLVAYALKITDLDPIGYDLLFERFLNPERVSMPDFDVDFCMEKRDRVINYVA
DKYGRDAVSQIITFGTMAAKAVVRDVARVQGKPYGLADRLSKMIPGVPGMTLSKALEQEE
TLREFLESDENSDKEAANEIMEMAFKLEGLTRNVGKHAGGVVIAPGKLTDFAPLYCEEDG
TNLVTQYDKDDVESAGLVKFDFLGLKTLTIIDWAVKAANVKRAREGLDDLVIDHIPLDDS
PSFDLLKRGDTTAVFQLESQGMKELIKKLKPDVFEDIIALVALYRPGPLESGMVDNFVNR
KHGREPLAYPDPQYQHEWLEPILKPSYGVILYQEQVMQIAQELAGYTLGGADMLRRAMGK
KKPEEMEKQRAIFEEGAKGKGVDAGLAMKIFDLVEKFAGYGFNKSHSAAYALVAYQTAWL
KVHYPAEFMAATISADMQNTDKVVTFIDECKTMGLQVLPPDVNSCGYRFTVNPEGDIVYG
LGAIKGLGEGPIEAIVTARAEGGEFKDLFDFCRRIDLKKINRRSLEAMVRAGVLDKLGLN
SSFHDRAQLLATLPDAIAAADQDARNEAAGIMDMFGAMDDSPATAVEWKPARSWNDETRL
NGERDTLGLFLTGHPIDQYEKEVQQFVTARINALQPTAKGEAATVAGLVVALRITRSKRS
GERMAFITLDDKTGRVEVSVFGKTFAEYGELVQKDTLLIFKGGVRNDEYTGSFNLVADEI
MDMRQAREAFARRLRVAVPIEEGLPEQLQQMLSPYQGGNTPVLLDLDHSIAAASFWLGDE
WKISPHESLVEELRIRFGEDAVRMEY
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
ttgactgatccccgttttgtccacctgcgccttcataccgattattcactggttgatgga
atcgttcgggttaaggaactgaccaagacctgcgtaaatgagcagattcctgcggtggca
gtcaccgatgattcgaatttgtttgccctgatcaagttctatcagaatgccatgaatgcg
ggtatcaaaccgttgatgggggcggatctctgggtgcagggcacgcacatagacgaaccc
gcctatctgtcgtttctggtgcttaatgaggtgggttatcagaacctgactttactgatt
agtcgtgcttggcagactaatcaggatcgcgggcgcgctttggtgaaacctgagtggctg
gcagaactgaatgaaggcctgatcgtgctttcagcggcgagccaaggggaagtagggcag
ttattgctagcaggcaaacacgaacaggcgcaacagtatgctcgttggcttgtgtcaacg
tacggtgatcgtttctatctggaagtgcagcgaacctctcgaccgggtgatgaggattgt
ttgcatgccagcgttgccttggccgaacaacttggcttgccagtggtagccaccaacgat
gttcgctttcttcgtcgcgaagactttgaagcccatgaatctcgagtctgcatccatgac
ggtaatactctggatgatccgcgacggccaaaaaaatattccgaagagcagtacctgaaa
tctgccgatgaaatggcgcagctgttttctgatttgcccgaagcgcttgagaacacggtg
gaaattgctcgccgctgcacgcttgatattcgtttaggagaaaacttcctgccggacttc
ccgattccggagggcatgaccattgagcaatatttcgagaaagtgtctcacgatggtctt
gaggaacgtcttaaggtcttgctcgatagcgatgaccctgagtatgcattaaagcgcaaa
gactacgatgaccggcttcgatttgagttggatatcatcaaccaaatgggatttcccggt
tacttcctaatcgttgccgattttatccagtgggctaaggataacgaggtgccggtggga
ccggggcggggttcaggtgcaggctcactggttgcctatgctttaaaaattaccgatttg
gatcccattggttacgacctcctgttcgaacggttcctgaaccccgaacgggtatccatg
cctgactttgacgtcgacttctgcatggagaagcgcgaccgtgtaatcaactatgtggcg
gataagtacggccgtgatgcagtgagccaaatcatcacattcggtaccatggctgccaag
gccgtagtgcgcgatgtggcgcgggtgcaaggtaagccctatgggctagcggatcgactt
tccaagatgattcccggggtgcctgggatgaccttgagcaaggcgttggagcaggaagaa
actttgcgcgagtttctggaaagcgatgaaaattccgacaaagaagccgccaatgaaatc
atggaaatggctttcaagctggaaggcttgacccgtaacgtgggtaagcatgctgggggg
gtagtgatcgccccgggcaagctcactgactttgcgccgctgtactgtgaagaagatggc
accaacctggtgacgcagtacgataaagatgacgtggaatccgcgggccttgtgaaattt
gactttctcggcctgaaaaccctgaccatcattgactgggccgtcaaagcggccaatgtg
aagcgtgctcgcgaagggctggacgatcttgttatcgatcatatcccgctagatgacagc
cccagttttgacctattgaagcggggcgataccaccgcggtattccagctggaaagtcag
ggcatgaaggagctaattaaaaagctcaagcctgacgtttttgaagacattatcgcattg
gtggctctgtatcgtcctgggccgctggaatctggcatggtggataatttcgtcaaccgt
aagcacggtcgcgaacctttggcctatccggaccctcagtaccaacacgagtggctggag
cctatcctaaaaccttcctacggggtcatcctgtatcaggaacaggtgatgcagattgcc
caggagctggccggttatacactgggtggcgcggacatgttgcgccgggctatgggtaag
aagaagcctgaagagatggaaaagcagcgggcgatctttgaagaaggggcaaaaggaaag
ggggtagacgcgggcctggccatgaaaatctttgatttggtggagaaattcgcaggctac
ggtttcaacaaatcccactctgcagcttacgccttggtcgcgtatcaaaccgcctggcta
aaggtccattatcctgcggagtttatggcggccaccatttctgccgatatgcagaacacc
gacaaggtggtgacgttcattgatgaatgtaaaaccatgggtttgcaggtactgccaccg
gatgtgaattcctgtggttaccgctttacggtgaacccggaaggcgacatcgtttatggt
ttgggcgccatcaaggggctgggtgaagggcccattgaagctatcgtcactgcacgggcc
gagggtggtgaattcaaggatttgtttgatttttgccgccgtattgacctgaaaaaaatc
aatcgccgttctctggaggccatggtgcgcgctggtgtgctggataagctgggtctaaac
agcagcttccatgatagggcgcaattgctggccaccttgccggatgcgattgcggcggcc
gaccaggatgcccgcaacgaagccgcgggtattatggatatgttcggggcgatggatgac
agtccggccactgccgtggaatggaagccggctcgttcctggaatgacgagacccgcctc
aacggtgagcgagatactctcggcttgtttttaactgggcaccccattgatcagtatgaa
aaagaagttcagcagttcgttactgcccggattaacgccctgcagcccacagccaagggg
gaggcggccactgtggctggattggtcgtggcactgcgtattacccgtagtaaacgcagt
ggtgaacgaatggcatttatcaccctggatgacaaaaccggacgggtggaagtgtctgta
ttcggtaagaccttcgctgagtacggcgagttggtgcagaaagatactttgctgatcttt
aagggcggggtgcgcaatgatgagtacaccggcagctttaacctagtagccgatgaaatc
atggatatgcgccaagcccgggaagcatttgctcgtcgtctgcgagtggcggttcccata
gaggaaggcttacccgagcagcttcagcaaatgctgtcgccgtatcaggggggcaatacg
ccagtattgctggatctggatcacagcatcgccgccgcgagcttttggctgggtgacgaa
tggaagattagccctcacgaatcgcttgtggaagagctgcgaatccgctttggagaagac
gcagtacggatggagtactaa
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