Alcanivorax borkumensis: ABO_1161
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Entry
ABO_1161 CDS
T00380
Symbol
recQ
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABO_1161 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abo03019
]
ABO_1161 (recQ)
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_1161 (recQ)
Enzymes [BR:
abo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABO_1161 (recQ)
Messenger RNA biogenesis [BR:
abo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABO_1161 (recQ)
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABO_1161 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HTH_CodY
EccE
Motif
Other DBs
NCBI-ProteinID:
CAL16609
UniProt:
Q0VQD9
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All DBs
Position
1321403..1323313
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AA seq
636 aa
AA seq
DB search
MLTLQQHLQQTFKLQGFRPGQERVINALLAGRSALAVFPTGGGKSLCYQLPALMLDGVTL
VVSPLIALMKDQVDQLHRLGIAAARLDSSVDAEQLQSIYRGLEDGSIKLLYVAPERLANE
RFLARLKRLSISMMAVDEAHCVSEWGHNFRPDYLKLAQLAKELEVGRVLALTATATPQVA
QQICDSFAIAPADHVQTGFFRPNLALSVRPYNVEERGRALLEALQARPSEPAIVYVTLQK
TATQVAALLSEQGLNAQAYHAGLKGEERHRVQEAFMSGQVNIVVATIAFGMGIDKADIRG
IYHYNLPKSLENYMQEIGRAGRDGEPSQCVLLASSDDLTVLENFSYGDTPDSEALAGLIG
WLVNQPAQFDLAVHELSGQFDVRPLVINTLLTYLELDGIIRSTAPFYTEYKLAFQISQAE
VLAQFDHERADFLRQVFAAGKEGRIWLTLKPIAVADQLQVDRVRILKAIGYLEQQGMVEV
RVAGVRQGYRMVNRPADPQALTAQIAEQFRVREQRDIQRLQQVCNWAQSSDCYQRGLVGY
FGEQLPQPCGQCSACKGEHQRFPERHRTAPDSAVILAVIAQRHGALATPRQLARFLCGIS
SPRASRARLARHPSFGSQMEVPFAEVLATCRAMLEP
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgctgacccttcagcaacacttgcagcagacattcaagcttcagggttttcgccccggc
caggagagggtcattaatgccttgctggccgggcgatccgcgctagcagtctttcccacc
ggtggtggtaagagcctgtgctaccaattacctgcgttgatgctggacggagtcacgttg
gtggtgtctccactgattgcattgatgaaagaccaggtcgaccaactgcaccgcttaggt
attgcggcggcgcggttggattccagcgtggatgccgagcagctgcagtccatctatcga
ggcttggaagacggcagtataaagttgctttacgtggcaccggaacgcctggccaatgag
cgctttctagcccggctgaaacggctatcgatcagcatgatggccgtggatgaagcccat
tgtgtgtctgaatgggggcataactttcgcccggattatttgaagttggcgcagttggcg
aaagagctggaggttgggcgggtgctggcgttaacggctaccgctacgcctcaagtggcg
cagcagatctgtgacagctttgccattgcccctgccgaccatgtgcaaaccgggtttttc
cgtcccaatttggcgttgagtgtccgcccctacaatgtggaagagcgaggtcgggcactg
ctggaagcgttacaggctcgtccctcggagccggcgattgtctatgtcactctgcagaaa
acggcaacgcaggtggcggctttgctgagcgagcaggggttgaatgcacaggcttaccat
gcgggattgaaaggtgaggagcggcatcgcgttcaggaagctttcatgtcggggcaggta
aatatcgtggtggccaccatcgctttcgggatgggtattgacaaggcggatattcggggt
atctatcactacaacctgcccaagtccctggaaaactatatgcaggaaattggccgggca
gggcgagacggcgagccttcacaatgtgtgctgctggccagttcggacgacctgaccgtg
ctggaaaatttcagttacggcgataccccagacagtgaagcgctagccgggctcattggc
tggctggtgaatcaaccggcgcagttcgaccttgcggtgcatgaattgtctgggcagttt
gatgtccgccctctggttattaataccctgctgacctatctggagctggacgggattatt
cgttcgacagcgccgttctatacggagtacaagctggcatttcagatatctcaagctgag
gtgttggctcagttcgaccatgagcgagcggattttttgcggcaggtctttgctgcgggt
aaagaggggcgcatctggctcactctgaaaccgattgccgtggcggaccaattgcaggtc
gatcgggtgcgaattctcaaggcgattggctatcttgagcagcagggcatggttgaggtg
cgtgtggctggggtgcgccagggctaccggatggtcaatcgtccagctgatccgcaggcg
ttgacggcacagatcgcagagcagtttcgtgttcgtgagcagcgcgacatccagcggctg
cagcaagtatgtaattgggcgcaaagtagcgattgttaccagcggggcttagtgggttat
ttcggtgagcagttgcctcaaccctgcggccagtgcagtgcctgtaaaggcgaacaccag
cggtttcctgagcgtcatcggactgctcctgattcggcagtaatcctggcggttatagcg
caaaggcacggggctttggcgacccctcgtcaactggcccgttttctctgtggcattagt
agcccccgcgccagtcgggctcgactggcgcggcacccgtcgttcggatcacagatggag
gtgcccttcgccgaggtattggccacgtgtcgggcgatgctagagccgtaa
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