Alcanivorax borkumensis: ABO_1695
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Entry
ABO_1695 CDS
T00380
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase, DEAD box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABO_1695 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abo03019
]
ABO_1695 (deaD)
03009 Ribosome biogenesis [BR:
abo03009
]
ABO_1695 (deaD)
Enzymes [BR:
abo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABO_1695 (deaD)
Messenger RNA biogenesis [BR:
abo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABO_1695 (deaD)
Ribosome biogenesis [BR:
abo03009
]
Prokaryotic type
rRNA helicases
ABO_1695 (deaD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAL17143
UniProt:
Q0VNV5
LinkDB
All DBs
Position
1929825..1931480
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AA seq
551 aa
AA seq
DB search
MSDSRSGFASLGLPEVLLTAIARQGFEQPSPIQAQAIPLLLDGHDLLGQAQTGTGKTAAF
ALPLLARLDPSLREPQMLILAPTRELAIQVATACEEFAKDIKGLQVLPIYGGGEYRTQLK
GLRGGAQVIVGTPGRVMDHMDRGSMKLNNLKALVLDEADEMLRMGFIDDVKWVLERTPDD
CQLALFSATMPPVIRKVADQHLKQPKLVRIDNGGATTGTTIRQRYWPVAGLNKLDAVCRI
LEAEEHDAVLVFVRTKQATLELAEQLNRRGLRAEALNGDIPQQQREKTVQRLKDKRFDLL
IATDVVARGLDVPRITHVVNYDMPGDPEAYVHRIGRTGRAGRQGDAILFVARREQHVLRQ
IERITRQSIEKMALPSVDDLNAKRIARFQEQLAGFTSGANVDEARALVNQLRDAMDISDN
DMAAALATMMFKREPLILKEPKMVKEPRRRESAHVGGRREDRNPRNRGDKGRTDKTMRRY
RIKVGHDHGVKPGNIVGAIANEAKLPSRLIGPIKIHQDHSTVELPEDLSPKQLHVIRTAR
VCQQALDLEMV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcagattcccgttccgggttcgcctctttaggcctgcccgaggttctgctcactgcg
atcgcccgtcagggcttcgagcagccttcgccgattcaggcgcaagccatcccgctgttg
ctggatggacacgatcttctgggccaggcacaaaccggcacaggtaaaacggctgcgttt
gcattgccccttttggcccgtctcgatccgtctctgcgtgaaccgcagatgctgatcctg
gccccaacccgcgagctggctattcaggttgccactgcgtgtgaagaatttgccaaagac
attaaaggtctgcaggttctgcccatttacggcggtggtgaataccgcacccagctgaaa
ggcctgcgcggcggcgcccaggtgattgtcggcacccccggccgcgttatggatcacatg
gaccgcggctccatgaagctaaacaatctgaaggctctggtgctcgacgaagccgatgaa
atgcttcgtatgggcttcatcgacgatgtgaaatgggtacttgagcgtactccggatgac
tgccagctggcgctattctccgccaccatgccgccggtcattcgcaaggttgccgaccag
cacctcaagcaacccaaactggttcgcattgataatggcggcgccaccactggcaccacc
atccgccagcgttactggcccgtcgcgggtttgaacaagctggacgccgtgtgccggatt
ctggaagcagaagaacacgatgcagtactggttttcgttcgtaccaaacaggcgacacta
gaactggccgagcagcttaaccgtcgcggcctgcgtgccgaagccctgaacggcgacatt
ccccaacaacaacgggaaaaaaccgtacagcgcctgaaagataagcgtttcgacttgctg
atcgccaccgacgtggttgcccgtggcctagacgtgccgcgcatcacccacgtggtgaac
tacgacatgcccggcgacccggaagcctacgtgcaccgcatcggccgtaccggccgggcc
ggtcgccagggtgacgccatcctgtttgtggctcgtcgtgagcaacacgtgttgcgtcaa
atcgaacgcattactcgccagtccatcgaaaagatggcgcttccctccgttgatgacctc
aatgccaagcggattgcccgctttcaggagcaactggccgggttcacctctggagccaac
gttgatgaagcccgcgcgctggtgaatcaactacgtgacgccatggatatcagcgacaat
gacatggcggccgcactggccaccatgatgttcaaacgcgaaccgttgattctgaaagaa
cccaagatggtcaaagaaccgcgccgtcgcgaatccgcccacgtgggtggccgtcgcgaa
gaccgtaacccgcgcaaccgcggcgacaaaggtcgcacagacaaaaccatgcgtcgctac
cggatcaaggtaggtcacgatcacggtgtgaagccgggcaatatcgttggtgccattgcc
aatgaagctaaactgcctagtcgcctgattggtccaatcaagatccatcaggaccacagc
accgtggaattgccagaagacctgtctccaaagcagttgcacgttatccgtaccgcgcgg
gtctgccagcaggctctagacctagaaatggtataa
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