Alcanivorax borkumensis: ABO_1768
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Entry
ABO_1768 CDS
T00380
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
abo
Alcanivorax borkumensis
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
abo03016
]
ABO_1768 (rnd)
Enzymes [BR:
abo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
ABO_1768 (rnd)
Transfer RNA biogenesis [BR:
abo03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
ABO_1768 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
CAL17216
UniProt:
Q0VNN2
LinkDB
All DBs
Position
complement(2014876..2015949)
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AA seq
357 aa
AA seq
DB search
MAYLWCEDNKEISEWQASLAAGSRLYLDTEFMRERTFWPQLALVQVHDGVRIRLIDTTEV
DGPTLLPVFQNHTLVMHACSEDLEAIATFTGQYPAAIEDTQIAAALSGEDMQWGYQKVVQ
MLLGVDLPKGATRTNWLKRPLSDEQLHYAEDDVKYLPEVAGILAERLDGLGRRAWWEEEC
ARLLKQARSQVLPQDAWRNVKGAGLLQGESLAVLAALAPWRDQMARERDLPKSFVLKDAQ
LLDLARTNRTDRGLLADLGFHPKQIRRDGDALLALIEQARGQTPPDPLPGPPDMAQKKLA
KTLRSRVAIIAEELNMKPDVLMRRRWLEALIRHPERVPEPLTGWRNDVVTQPLLELL
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggcgtatctctggtgcgaagataacaaagagatcagcgaatggcaggcaagcctggcg
gcaggtagtcggctatacctggacacggaattcatgcgtgagcgcaccttctggccacaa
ttggcactggtgcaagtccatgatggtgtgcgcattcgacttattgatactaccgaggtt
gatgggcctactttgttgccagtatttcagaatcataccttggtgatgcatgcttgttcc
gaagacttggaagcaattgctacgtttactggccagtacccggcggccattgaagacacc
cagattgccgctgcactgagcggcgaagatatgcagtggggttaccagaaagtggttcaa
atgctgttgggtgttgatcttccgaaaggggccacgcgaaccaattggctgaaacggcca
ttaagcgatgagcaacttcactacgcggaagatgacgtaaaatatctcccggaagtggcg
gggattctcgccgagcgactcgatggcttgggccgccgcgcttggtgggaagaagaatgc
gctcgtttgctcaagcaggctcgcagccaagtgctgccgcaagacgcttggcgtaacgtg
aaaggcgcgggcttgctgcagggcgaaagcttggcggtattggcagcactggcgccgtgg
cgtgatcagatggctcgggagcgagatctgcccaaaagctttgtgttaaaagatgcccag
ttgctggacttggcccgtaccaatcgtaccgacagaggcttgctcgcggacttgggcttt
catcccaaacagattcgtcgcgacggagatgcgttgttggcattgattgaacaggcccga
gggcagactccccccgatccgttgccggggccgccggatatggcacagaagaaacttgcc
aaaaccctgcgtagccgggttgcgattattgccgaagagttgaatatgaagcccgacgta
ttgatgcgtcgccgttggctggaagccctgatccgccacccggagagggtgccggaaccg
ttgaccggctggcgtaatgatgttgtcacccaacctctgctggagttgctgtag
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