Alcanivorax borkumensis: ABO_1949
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Entry
ABO_1949 CDS
T00380
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03030
DNA replication
abo03430
Mismatch repair
abo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABO_1949 (holA)
03430 Mismatch repair
ABO_1949 (holA)
03440 Homologous recombination
ABO_1949 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abo03032
]
ABO_1949 (holA)
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_1949 (holA)
Enzymes [BR:
abo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABO_1949 (holA)
DNA replication proteins [BR:
abo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABO_1949 (holA)
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABO_1949 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol3_delta
DNA_pol3_delt_C
HP_1247_M
DNA_pol3_delta_C
DNA_pol3_gamma3
3HCDH
DUF2065
Motif
Other DBs
NCBI-ProteinID:
CAL17397
UniProt:
Q0VN51
LinkDB
All DBs
Position
2228631..2229644
Genome browser
AA seq
337 aa
AA seq
DB search
MRLRPEQLGKHLSATLLPVYLVAGDEPLQQGELIDDLRRAARDQGFDERQRFSSDTGIDW
NALLNESQSMSLFGGRRILELVLNDKRPDKTGSQILRDVLASLKGEASSDTLLLIRCSRL
DRRKDWNSAWVKALDEMGAVIEVWPVEGNGLRNWLQERLTSRGLRASEDALALLIERSEG
NLLAAAQEVDKLALLVEDGQVGPEDVQQAVGDSSRYSPFDLTDATAQGDSQRVMHIIQTL
RAEGVEPPVLLWALSRDIRLLDGMLGGGPPPRLPPQRVRAMQNQAQRLNPQQLRIAQACA
IRADQCVKGMAKGDPWKHIISLALRLAGHPLPRSMER
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctgcgtcccgaacaacttggcaagcacctgtccgcgacgctgttgcccgtttat
ctagttgccggtgacgaacccctacagcaaggcgaactcatcgacgatttacgccgagcg
gctcgcgaccaaggctttgacgaacgccaacgcttttccagtgataccggcatcgactgg
aacgccctgctcaatgaatcacagagcatgagcctgtttggtggccgccggattcttgaa
ctggtcctgaacgacaaacgcccggataaaaccggcagccaaattcttcgtgatgttctc
gccagcctgaaaggcgaagccagtagcgacaccctgttattgattcgttgctcgcgactg
gatcgacgcaaggactggaatagcgcctgggtaaaagccctagatgaaatgggcgcagtg
attgaagtctggcctgtagaaggaaatggcctacgcaactggctacaggaacgcctaacc
agccgcgggctgcgcgccagtgaagacgccctcgccctgctgatcgaacgcagtgaaggt
aatctgctggccgccgctcaagaagtggacaaactggccctgctagtggaagacggccaa
gtcgggccggaagacgtgcagcaagcagtgggcgactccagccgctactcgccgttcgat
ctcaccgacgccaccgcccaaggtgatagccaacgggtcatgcacatcatccagaccctt
cgcgctgaaggcgtagaaccccctgtattactgtgggccttgagccgcgacatccgcctg
ctcgatggcatgctcggcggcggaccgcccccgcgcctgcccccgcaaagggtacgcgcc
atgcagaatcaggcccaacgccttaacccccagcaattacgcattgcccaagcctgcgcc
atccgcgccgaccaatgcgtcaaaggcatggccaaaggcgacccttggaaacacatcatt
tctctggctctgcgcctagccggccaccccctgccccgcagtatggaacggtaa
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