Alcanivorax borkumensis: ABO_2086
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Entry
ABO_2086 CDS
T00380
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
abo
Alcanivorax borkumensis
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
abo03009
]
ABO_2086 (dbpA)
Enzymes [BR:
abo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ABO_2086 (dbpA)
Ribosome biogenesis [BR:
abo03009
]
Prokaryotic type
rRNA helicases
ABO_2086 (dbpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
P-loop_SecA
CMS1
CoA_binding_2
Semialdhyde_dh
Motif
Other DBs
NCBI-ProteinID:
CAL17534
UniProt:
Q0VMR4
LinkDB
All DBs
Position
complement(2375631..2377010)
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AA seq
459 aa
AA seq
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MTDSSFASLPLTPEMLANLDALGYVTMTPVQAQSLPLLLKGHDVIAQASTGSGKTAAFGL
GLLHPLNPRYYGCQALVLCPTRELADQVAVEIRRLARGPGNIKVLTLCGGQPIGPQIGSL
EHGAQIVVGTPGRVLKHLSKGTLSLDGLNTLVLDEADRMLDMGFYDSIAEVIRQTPPRRQ
TLLFSATYPPGIKQLAETFMSNPQHVEVETLHDNSQIEQRYYEVEPFQREEAVASAIACF
RPVSCVVFCVTKQQCQDVVNQLCRQGLSAMVLNSDLEQRERDEVLTLFANRSLSVLVATD
VAARGLDIDNLDMVINAELSHEPQTHIHRVGRTGRAGEKGLAINLVAPRESRRAIAIEQL
QGAPLNWHPLNSLKPREGEPMQPPTITLCIGAGRKDKLRPGDILGALTGDAGIAGNQVGK
ITVTDYQAYVAIDRESADLALERLLKGKIKGKNRRVKKL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgattcttcttttgcctccctgccgttgaccccagaaatgctcgctaacctggac
gcgctgggctacgtcaccatgactcccgtacaagcgcaaagcctgccgttattgcttaaa
gggcacgatgtgattgcccaggccagtaccggtagcggcaagacggcagcctttgggctt
ggtttgctgcaccctttgaacccgcgctattacggttgccaggcgttggtgctgtgccca
acccgggagttggcagatcaagtggccgtggaaattcgccggttggcccgtggtcccggc
aatatcaaagtactcaccctgtgtggtgggcaacccatcggcccgcagatcggctcactg
gagcacggtgcgcagattgtggttggcacaccggggcgcgttctaaaacacttgagtaag
gggacgctgagcttggacgggctgaatacgctggtattggatgaagccgatcgcatgctc
gatatgggcttttacgacagcattgcggaggtgattcggcagacgccgccacgccgtcaa
accctgctgttttccgccacctacccgccgggaatcaagcagctggcagaaactttcatg
agtaatccccagcatgtagaagtggaaaccctgcacgataatagccagatcgagcagcgc
tattatgaagtggagccgttccagcgcgaagaggcagtggccagcgccattgcctgtttc
cgtccagtatcctgcgtggtgttctgtgtgaccaagcagcaatgccaggatgtagtgaat
cagctttgtcgtcaggggctgtcagccatggtgctcaacagtgacctggagcagcgtgag
cgcgatgaggtgctcacgttgtttgccaaccgcagcttatcggtgctggtggccacggat
gtggcggcccgggggctggatattgataacctggatatggtcatcaatgcggagttgtcc
cacgagccgcaaacccatatccatcgtgttggccgcaccggccgtgccggcgaaaaaggg
ctggctattaatctggtagccccccgtgaatcccggcgcgctatagctattgaacagttg
cagggcgcgcctttgaattggcatccgctcaatagccttaagcctcgagagggggagcca
atgcagccgcctaccatcaccttatgtatcggtgcaggccgcaaagacaagctgcgcccc
ggtgatatcctcggtgcgcttaccggtgatgctggcattgcgggtaatcaggtgggaaaa
attaccgtcacggattatcaggcctatgtggctatcgatcgtgagagtgcggacttggct
ctcgaacgattactgaaaggcaaaatcaaaggaaaaaaccggcgggtgaaaaagctttaa
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