Alcanivorax borkumensis: ABO_2156
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Entry
ABO_2156 CDS
T00380
Name
(GenBank) nuclease, putative
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
abo
Alcanivorax borkumensis
Pathway
abo03030
DNA replication
abo03430
Mismatch repair
abo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABO_2156
03430 Mismatch repair
ABO_2156
03440 Homologous recombination
ABO_2156
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abo03032
]
ABO_2156
03400 DNA repair and recombination proteins [BR:
abo03400
]
ABO_2156
Enzymes [BR:
abo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
ABO_2156
DNA replication proteins [BR:
abo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
ABO_2156
DNA repair and recombination proteins [BR:
abo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
ABO_2156
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Motif
Other DBs
NCBI-ProteinID:
CAL17604
UniProt:
Q0VMJ4
LinkDB
All DBs
Position
complement(2465296..2465817)
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AA seq
173 aa
AA seq
DB search
MVAIDCETTGLDSRTAELVSIAAVVIKEGRVLSSQSLNVKLAAPDSLREDSICIHRLRPV
DLEGGASIREALEALLALIDNRPLVGWCVAFDVAMINRYLRPLMGFDLPNDTLELSALYQ
RKMRYWQPDITPDLRFDAMASALQVPVIERHTARGDAVTSALMYLQLQKSTLG
NT seq
522 nt
NT seq
+upstream
nt +downstream
nt
gtggtggccatcgattgcgaaaccaccgggctggatagtcgtactgccgagctggtgtct
attgctgcggtggtgataaaagaagggcgggtgctgagcagccagagcctgaatgtgaag
ttggcggctccagatagccttagagaagacagcatttgcattcatcggctgaggccagtg
gacttggagggtggggcgagtatccgtgaagcgctagaggcgctgctggcgttgattgat
aaccggcctttggtgggctggtgtgtggcgtttgatgtggccatgatcaaccgctatctg
agaccgttaatgggctttgatttgcctaatgatacccttgaactgtctgcgctataccag
cgaaaaatgcgttactggcagcccgatataacaccggatttgcgctttgatgccatggct
tcggccttacaagtgccggtaattgagcgccatactgcccgcggagacgcggtgactagt
gcattgatgtacctgcagttgcagaaatccacacttggctga
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