Apilactobacillus bombintestini: D7I45_05935
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Entry
D7I45_05935 CDS
T07159
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
abom
Apilactobacillus bombintestini
Pathway
abom03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abom00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7I45_05935 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abom03019
]
D7I45_05935 (rny)
Messenger RNA biogenesis [BR:
abom03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7I45_05935 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
HDOD
LapA_dom
OppC_N
UPF0154
Motif
Other DBs
NCBI-ProteinID:
AYF93030
UniProt:
A0A387B1K2
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Position
complement(1239839..1241434)
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AA seq
531 aa
AA seq
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MIGLITVLFLILGAICGYFFSNMRIKSQIDTAKRQAQHHLKKSADEYAYKAKKIIADDKQ
DVLQYQKIADDEITSQQEENNTREQRLYQHEKYLDQMKTRLLKFSQDLKSQSDEQRRVQD
DIDDVLLQAKDIWQQREEMLQNISRVDKNTAKQTVLNQTSNELSREKDIEVKYNLSESKV
AANKIANDLVIEAIQRGPRDEPRSHIERNVNVPNGDVKAKLIGKDEQHIRLLESLTGTDL
IFDEDVPLLLHIVTHDPIRREIVRNTIESLIISHHFTNSNIEYLVNITTQKVNAELRETG
ENVVHSLRVGRVHPDLMKIIGKMKYRTSYGQNVLYHSVETAQLTGALAAELGLNTQLAKR
AGLLHDIGKSIDHEVGGTHVELGVKLTQVFHEDDVVVNAIYSHHGDVEPDNPISILVATA
DAISGARPGARSESIEEYVTRLRNLEAIANRHKGVKDSYAIQAGREIRIIVNPEMLNDDR
SQQLTHCVKDQIQDELTYPGKIKVTTIRELKAVQYVGKAPKKHYRNAVKEG
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
ttgattggattaattactgtgttatttctgattttaggagcaatttgcggatactttttc
agtaatatgcgcattaaaagccaaatagatactgctaaacgtcaagcacaacatcactta
aaaaagtcagccgatgaatatgcttataaagctaaaaagattattgctgatgacaaacaa
gatgtattgcaatatcaaaaaattgctgatgacgaaattacttctcaacaagaagaaaat
aacactcgtgaacaacgcttatatcaacacgaaaaatacttagaccaaatgaaaacacgt
ttgcttaagttttcgcaagatttaaaatcacaatccgacgaacaacgacgagtacaagat
gatatcgacgatgttttactacaagctaaagacatttggcaacaacgtgaagaaatgttg
caaaatattagtcgagtagataaaaacactgcaaaacaaacggttttaaaccaaacttcc
aatgaactaagtcgtgaaaaagatattgaagttaaatataacttgtctgaaagtaaagta
gcagctaataagattgctaatgacttagtgattgaagccattcaacgtggaccacgtgat
gaaccacgtagtcatattgaacgcaacgttaacgttcctaatggtgatgttaaagcaaag
ttgattggaaaagacgaacaacatattcgtttgctagaatccttgaccggtaccgattta
atctttgacgaagatgttccattgttgttacacatcgtaacgcatgatccgattagaaga
gaaatcgtccgaaacacgattgaaagcttaattatttcgcatcactttactaacagcaat
attgaatatttagttaatattactacccaaaaagttaacgccgaattgcgtgaaacaggg
gaaaacgtagtacattctctacgcgtaggacgtgtacatcctgacctaatgaaaattatc
ggtaagatgaaataccgtactagttatggtcaaaacgtgctatatcactcggtagaaact
gcgcaattaactggtgctttagctgctgaattaggtttaaatacccaattagctaagcgg
gctggtttacttcatgatattggtaaatccattgaccatgaagtcggtggtacccacgtg
gaattaggggttaaattaactcaagtattccacgaagatgacgtagtggtaaatgcgatt
tattctcaccatggggatgtggaacctgataatcctatctctattttggtagctacggct
gatgccatttcaggtgctcgtccaggagctagaagtgaatcgattgaagaatatgtcact
cgtcttcgtaacttggaagctatagctaaccgccataaaggtgttaaagatagttacgct
attcaagccggaagagaaattagaatcattgttaacccagaaatgttaaatgatgatcga
agccaacaattaacccactgtgttaaagaccaaattcaagatgaattaacttacccagga
aagattaaggtaactactattcgtgaattaaaggccgttcaatatgtgggaaaagcacct
aagaaacattatcgcaatgctgtaaaagaaggctaa
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