Acinetobacter bouvetii: ACBO_12050
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Entry
ACBO_12050 CDS
T07603
Symbol
hrpA
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
abou
Acinetobacter bouvetii
Brite
KEGG Orthology (KO) [BR:
abou00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abou03019
]
ACBO_12050 (hrpA)
Enzymes [BR:
abou01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
ACBO_12050 (hrpA)
Messenger RNA biogenesis [BR:
abou03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
ACBO_12050 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
NACHT
PhoH
ResIII
AAA_30
TsaE
AAA_25
Motif
Other DBs
NCBI-ProteinID:
BCU64414
LinkDB
All DBs
Position
1315244..1319164
Genome browser
AA seq
1306 aa
AA seq
DB search
MQSRLNVDQLVMARDLHRLNRLKKGKDADQKQHQELFEKSNAKVRERIQRIPNIKLNQDL
PVTQYADKLIEAIQKHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGLIGHTQPRRLAARS
VSQRIAEEVGEKLGESISFKVRFNEQGSQDSILRLMTDGILLAELSNDYFLTKYDTIIID
EAHERSLNIDFIMGYLKQLLPRRKDLKVIITSATLDVNRFSNYFHGAPIFEVEGRSFPVE
LRYRPISELNIGGSDDDEFDDFEENLPRAVVQAVEECFRDAQEKGHPEYADTLIFASTEQ
EIRELQETLIKHGPRHTEVLPLYARLALAEQQKIFNPTGGGRRIIIATNVAETALTVPNI
RYVIDSGFARISRYNYRSRVQRLPIEAISQAAANQRKGRCGRIAPGVCIRLYSEDDFQSR
PEFTEPEIKRTNLASVILQMQSLGLGTLEDFDFIEPPDHRLVNDGRKLLIELGALKEKSA
KADQASAQSSSKNSQRHSNNNDGALTKIGQQMAKMPIDPRLSRMILGGAHFGVLNEVLVI
VAALAVQDPRERPADKQMQADQKHALFREEDSDFLFYLKLWEALVANRDMSENKRRTFAR
NHFLSWLRLREWKKTHEQLVDLAKGLKLSFNEKKANYENLHRALLTGLLSFIANKTDERN
VFMAVRQQKARVFPASTLHKSNTPWVMAFEMVETSQVYLRTLAKIEPEWILLAAGDLLKH
HYFEPHWSKKAGVVNAYDQISLFGLIIEPKRQINYEKVDQPAAHEIFLRDALTTGNLGIS
PPFLQHNLLKLEEVERVEDKLRRRDLVVDEETIYQFYASKVPEEVASRRSFEDWRATVES
KEPRYLFVDDDALWLNDRPATQQFPDYLRNGELRLAASYRFDPSHDEDGATMKIPVQALP
QVDENIWSWGIPGWRQDLIEALLKALPKDKRRHLVPIPDTARKLSERIDAVHLQQHIFSF
LAFQLRGEQITEKDFSFERVEQYLLPLIKVIDEKGRVIEQGRDLSELKARCRTETHSPVK
QLKGEFQTFPENFVFEASQKVTGVVVKQYQALVPVKDFASLEQKDESGVVIQTFNDQFEA
VKQHREGVIRLVHLQLGDLVRQLKKQISKPLALAYSSLGDRAKLEQMLVYATLQMAINEL
PVNINEYQNLVLNVKKSFLTHGQNALAMLSDIFIQWQDIRRKLLVLDDSVFGKNIDDVED
QLDLMSLSDFVYVKSSDIWQEFPRYLKALVLRLERLPNNLQRDNSAIDQVDPWMEKLFKF
KNDTRLKELYFMVEELRISLFSQPMKTKMPISPSRLQKAWEKLGIN
NT seq
3921 nt
NT seq
+upstream
nt +downstream
nt
gtgcagagtcgtttaaatgtagatcagcttgtgatggcgcgtgaccttcaccgtttaaac
cgactgaaaaagggcaaagatgcagatcaaaaacagcatcaggaattattcgaaaaatcc
aatgccaaagtccgtgagcggattcagcgcattccaaacatcaagctcaatcaagatttg
cccgttactcaatatgcagacaagctgattgaagcgattcaaaagcatcaagtgattatt
gtggcaggtgaaaccggttcgggtaaaaccacgcagctgccgcaaattgccatgctggca
ggccgcggtttaaccggattgattggccatacgcagccgcgccgtctggctgcgcgcagc
gtgtcacagcgtattgcagaagaagtgggtgaaaagcttggcgaatccatttcgtttaaa
gtccgctttaatgaacagggttcacaggattcaatactccgcttaatgacggatggtatt
ttattggcagagctttcaaatgactactttttaaccaaatacgacaccattattattgat
gaggcgcatgaacgttcgctgaatatcgatttcattatgggctatttgaagcagctcttg
ccgcgccgcaaagatttaaaagtcatcatcacgtctgcaacactcgatgtaaaccgtttc
agcaattactttcatggcgcgccgatttttgaagtagaaggccgcagctttcctgtagaa
ctgcgttaccgtccgatttcagaactgaatatcggcggcagtgatgacgatgagtttgat
gattttgaggaaaatctgccgcgcgctgttgtacaggctgtcgaagaatgcttccgggac
gcacaggaaaaaggccatcctgaatatgcggataccctcattttcgccagtacggaacag
gaaatccgtgaactgcaagagactttaattaagcatggcccgcgccatactgaagtcttg
ccgctgtatgcgcgtttagcccttgcagaacagcaaaaaatctttaatcccaccggcggc
gggcggcgtattattattgcgactaacgttgcggaaacggctttaaccgtacccaatatc
cgttacgtgattgacagcggtttcgcccgtatttcccgctacaactaccgttcccgggtg
cagcgcctgccgattgaagccatctcgcaagcggcagccaatcagcgtaaagggcgatgc
ggccgtattgccccaggtgtctgtatccgcctgtatagcgaagacgatttccaaagccgc
cctgaattcaccgaacctgaaattaagcggaccaacttggcttcggttattttgcaaatg
caaagtttgggtttgggaactttagaagactttgactttattgagccgcctgatcatcgc
ttagtcaatgatggccgtaagcttttaattgaactgggcgctttaaaagaaaaatcagca
aaagcagatcaagcgagtgcacaaagttcatcaaaaaatagtcagcggcactccaataat
aatgatggcgctttaaccaaaatcggtcagcaaatggcgaaaatgccgattgacccgcgt
ttgtcacggatgattttaggcggcgcgcattttggcgtgctgaatgaagttttggtgatt
gtcgcggctttggcggtgcaagacccgcgtgaacgccctgcggataagcaaatgcaggcc
gatcaaaagcatgctttattccgcgaagaagattcagattttctgttctatcttaagctt
tgggaagccttggttgccaaccgtgacatgagtgaaaacaaacgccgcacatttgcacgc
aatcactttttaagctggctgcggttgcgggaatggaaaaaaacccatgaacagctggtc
gatttggcaaaaggcttaaagctttcatttaatgaaaagaaagccaactatgaaaatctg
catcgcgctttgcttacaggcttattgtcgtttattgccaataagaccgatgagcgcaat
gtctttatggcggtgcgccagcaaaaggcccgggtatttccggcctcgactctgcacaag
agtaataccccctgggtgatggcttttgaaatggttgagacgtctcaagtgtatttgcgg
actttggctaaaattgaacctgagtggattttgcttgccgcaggcgatttgctgaagcat
cactattttgaaccgcattggtcgaaaaaagccggggtggtgaatgcctatgatcaaatc
tcattgtttggcttaattattgagccgaaacgtcagatcaattacgaaaaagtggatcag
cctgcggcgcatgaaattttccttcgtgatgcgctgacgactgggaatcttggaatttca
ccgccatttttgcagcacaatttgctgaaactggaagaagttgagcgggtagaagataag
ctgcgccggcgtgacttggtggtggatgaagaaaccatttaccaattctacgcgtctaaa
gtgccggaagaggtggccagccgccgttcgtttgaggattggcgcgctacggttgagtct
aaagagccgcgctatttatttgtcgatgatgatgcgctgtggctgaatgaccgcccagcc
acgcagcagtttcctgattatttgcgcaatggcgagttgcgtttagctgccagttaccgt
tttgatccaagccatgatgaagatggcgcaactatgaaaattccagttcaggcgctgccg
caggtagatgaaaatatctggtcgtggggcattcccggctggcgtcaggatttaattgaa
gccttactcaaagcgctgcctaaagataagcggcgtcacttggtgcctatcccagatact
gcacggaagctgtctgagcgaatagatgcggtgcatctgcagcagcatatttttagtttt
ttagccttccagctgcgtggcgaacaaattactgaaaaagatttcagctttgagcgggtt
gaacaatatttattgccgctgattaaagtaatcgatgaaaagggccgtgtgattgaacaa
ggccgtgatttatcggagttaaaagcgcgctgccgcacagagactcacagtccagtcaag
caattgaaaggggagttccagactttccctgaaaactttgtttttgaagcatcgcaaaaa
gtcacgggtgtggtggtgaagcagtatcaggcgcttgtacctgtgaaagattttgcttca
ctggagcaaaaagatgaatcgggcgtcgtgattcaaacctttaatgatcaatttgaagcg
gtgaagcagcaccgtgaaggggtcatccgtttagtgcatttgcagctgggcgacctcgtg
cgccagctgaaaaaacagatttcaaaaccgctggcattggcttattcttcgctgggcgac
cgagctaaattagagcaaatgttagtttatgccacactgcagatggcaataaatgagctt
cctgtcaatattaatgaataccaaaacttggttttaaatgtaaaaaaatctttcttaacg
catgggcaaaacgctttggcaatgctcagcgatatcttcattcaatggcaggatatacgg
cgcaaactgctggttttagacgattctgtgtttggaaaaaatattgatgatgtcgaagat
cagcttgacttaatgagcctttcggattttgtctatgtcaaatcttccgatatttggcaa
gaatttccgcgttatttaaaagccttggtcttgcgtttggagcgcttaccaaataacctt
caaagggacaattctgccattgatcaagtagatccgtggatggaaaaattatttaagttt
aaaaatgacactcgccttaaagaattgtatttcatggtcgaggagttgcgtatctcttta
ttctcccagccgatgaaaaccaagatgccgatttctccttcccgcttgcagaaagcatgg
gaaaaacttggaatcaattaa
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