Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT101903
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Entry
AGABI1DRAFT101903 CDS
T03136
Symbol
AGABI1DRAFT_101903
Name
(RefSeq) hypothetical protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
abp03041
]
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
03009 Ribosome biogenesis [BR:
abp03009
]
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
Enzymes [BR:
abp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
Spliceosome [BR:
abp03041
]
Complex A
U2 snRNP components
U2 related factors
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
Complex B
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
Ribosome biogenesis [BR:
abp03009
]
Eukaryotic type
90S particles
Helicases
AGABI1DRAFT101903 (AGABI1DRAFT_101903)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
HA2_N
AAA_22
AAA_19
Helicase_C
nSTAND3
ResIII
T2SSE
ABC_tran
SRP54
AAA_7
ATPase
PhoH
AAA_23
AAA_30
AAA_16
AAA_29
Motif
Other DBs
NCBI-GeneID:
18821826
NCBI-ProteinID:
XP_007332214
JGI:
Agabi_varbur_1_101903
UniProt:
K5XQX5
LinkDB
All DBs
Position
Unknown
AA seq
685 aa
AA seq
DB search
MSKQAKAAARGPLFGFIPRHVQGRQIRKALPHSAQYKAILNMRKKLPVYEQMDSFLEIFN
RNQIMIIVGETGSGKTTQIPQFVAFSDLPHTRGKMVACTQPRRVAAMSIAKRVSDEMDGE
SRYKHSCGSELIVAVELGRQVGYSVRFEDMIEPGTTFLKYMTDGMLLREAMNDNTLAQYS
TIILDEAHERTLATDILMGLLKDLAKRRFDLKIIVMSATLDAVKFQKYFSIRSDSEASLF
KVPGRTHPVEVFYTQEPEKYYVEAAIRTVLMIHRAEKPGDILLFLTGEEEIEDACRKIKI
EADDIASQDPDSVGPLVCIPLYSSLTPQQLQRIFDPALGPSQVGGPSGRKVVVATSIAET
SLSIDGIVFVVDPGFSKQKVYNPRLRMESSLVCPISKDSAQRRAGRAGRTRPGKCFQDLL
RFDYVDPPAPETLMRALELLNFLAAMDDEGNLTALGKLMADFPLDPQLSKLLIASPDFKC
SNEILTITAMLSVPNVWLRPNNQRREADAAKEAFTVPESDHLTLLNVFNQYMLNKHDRNW
AWSNYISARALAQAENVRQQLQRIMKRLDIDLVTTNDQVKLFTNIRKALPVELHPSCGLK
TQPEWVISNEFVLTTRLYIRTVTEVRPEWLLENARLYFDLDSFPNGETKRALKRVQAKNF
GLEKSRNETSRGRSRKGGKRKKNRE
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaacaggcaaaagcagctgctcgagggcctctctttggcttcataccccgtcat
gtccaaggtcggcagatcaggaaggcactaccacatagtgctcagtataaagccattctc
aatatgcgcaaaaaacttcccgtttatgaacaaatggacagttttttggaaatttttaat
cgaaatcaaatcatgattatcgttggcgagacgggatctggcaaaaccactcagatacct
caatttgttgccttttcggacctaccgcatacaaggggcaagatggtggcctgcactcag
cctcggcgtgtcgcagctatgtccatagcaaagcgcgtgtccgacgagatggatggtgag
tcgcgctataaacacagctgtggttccgagttgatagttgcagtcgagcttggtcgtcaa
gttggttactcggtccgttttgaggatatgatagaacctggtactactttcctcaaatat
atgacggacggtatgcttctccgtgaagccatgaacgacaatactcttgcacagtactct
accatcattcttgacgaggctcatgagcgtaccctcgcgacagatatcctcatgggcctt
ctcaaggacctcgcaaaacgccgattcgaccttaaaatcatcgtcatgtctgcaactcta
gatgcagtcaaatttcaaaagtactttagtatccgatccgactctgaagcttctctgttc
aaggttcctggacgtacccaccctgtcgaagtcttctatacacaagagcctgaaaaatac
tatgtcgaagctgctattcggacggtgttaatgattcatcgtgctgagaagccaggggac
atcctcttgttcctgactggagaagaggagattgaagacgcatgtcgcaaaatcaaaata
gaggcggatgacatcgccagtcaggatcccgactctgtcggtccccttgtgtgtatacca
ctttactcttcccttacccctcaacaactgcagcgtatatttgaccctgcacttggacct
tcccaagtcggcggaccgtccggtcgtaaagtcgtggtggcaaccagcattgccgaaaca
tccctttccattgacgggatcgtgtttgttgttgaccctggattctcgaaacaaaaagta
tataacccgcgtctccgtatggagagctcgctggtctgtccaatctcgaaggattcggct
cagcgacgcgctggtcgtgccggtcgtacgaggcccggcaaatgtttccaggatcttctt
cggtttgactacgtggacccccctgctccagagacgttaatgcgtgctcttgagctcctc
aactttttggctgctatggacgatgaggggaacttgacggcgctcggaaagctcatggct
gatttccccctggatcctcagctctcaaaacttttgattgctagcccagattttaaatgc
agcaatgaaatactgaccatcaccgctatgttgtcggttcccaatgtctggttacgaccg
aacaatcagcgacgggaagctgatgctgcgaaggaagcgtttactgtcccagaaagcgat
cacctcacgctcctcaacgtctttaatcaatacatgctgaataagcatgataggaattgg
gcttggagcaactatatttctgcacgcgcacttgcacaagcggagaatgtgcgtcagcaa
cttcagcgaatcatgaaacgactcgacattgatcttgtgacaacgaatgaccaggtcaag
ctgttcacgaacatccggaaggcgcttcctgttgaactccacccgtcgtgtggcttgaag
acacaacctgagtgggtgatttccaacgaatttgtgttgacgacacgtttgtacatccgc
actgtgaccgaagttaggcccgaatggctgcttgaaaatgcacgactatattttgatctc
gattcgtttccaaatggtgaaacaaagagagcgctcaagcgagtgcaggcaaagaacttt
gggctggagaagagcaggaatgagacttcgaggggacgctcccggaaaggcggaaagcgc
aagaagaacagagaatga
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integrated database retrieval system
