Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT110162
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Entry
AGABI1DRAFT110162 CDS
T03136
Symbol
AGABI1DRAFT_110162
Name
(RefSeq) hypothetical protein
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018
RNA degradation
abp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI1DRAFT110162 (AGABI1DRAFT_110162)
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI1DRAFT110162 (AGABI1DRAFT_110162)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT110162 (AGABI1DRAFT_110162)
03041 Spliceosome [BR:
abp03041
]
AGABI1DRAFT110162 (AGABI1DRAFT_110162)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AGABI1DRAFT110162 (AGABI1DRAFT_110162)
mRNA degradation factors
5'-3' decay
Lsm complex
AGABI1DRAFT110162 (AGABI1DRAFT_110162)
Spliceosome [BR:
abp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
AGABI1DRAFT110162 (AGABI1DRAFT_110162)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
18822870
NCBI-ProteinID:
XP_007325433
JGI:
Agabi_varbur_1_110162
UniProt:
K5Y5V3
LinkDB
All DBs
Position
Unknown
AA seq
84 aa
AA seq
DB search
MASQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKET
KLAQTLLNGNNICMLIPGSTGPGE
NT seq
255 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcaaatcctacctctcgaattaattgacagatgcatcggttcaaagatctgg
gttgtaatgaagaatgatcgcgaattttctgggacgctgcttggatttgatgacttcgtt
aatatggttctagaggatgtcattgaatatgagacgacgccagagggaaaaaaggagaca
aaactcgcgcaaacgctactcaatgggaataacatttgcatgttgatacctggaagtaca
ggtcctggggagtag
DBGET
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