Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT110279
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Entry
AGABI1DRAFT110279 CDS
T03136
Symbol
AGABI1DRAFT_110279
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03013
Nucleocytoplasmic transport
abp03015
mRNA surveillance pathway
abp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
09122 Translation
03013 Nucleocytoplasmic transport
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
03015 mRNA surveillance pathway
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
03041 Spliceosome [BR:
abp03041
]
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
Enzymes [BR:
abp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
Spliceosome [BR:
abp03041
]
Complex C
Other components
EJC/TREX
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
AGABI1DRAFT110279 (AGABI1DRAFT_110279)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
18822902
NCBI-ProteinID:
XP_007325510
JGI:
Agabi_varbur_1_110279
UniProt:
K5Y676
LinkDB
All DBs
Position
Unknown
AA seq
439 aa
AA seq
DB search
MSAHDNDDLIDYEDEHDLVPNSGATAAGTNGAPATGAVAGGDNDKDKKTFSGIHSTGFKD
FLLKPELLRAISDLGFEHPSEVQQECIPQAVLGMDVLCQAKSGHGKTAVFVLATLQQLEP
VNGEVSVIVLCHTRELAFQIKNEYTRFAKYMPDVRVSTFYGGTPVAKDAEILRDKNKCPH
IVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMF
SATLAKEIRVTCKKFMANPLEIFVDDETKLTLHGLQQHYVKLEEVQKNRKLNDLLDTLEF
NQVVIFVKSVARCIELDKLLVSCNFPSISIHSGLTQEERINRYTAFKAFEKRILVATDIF
GRGIDVERVNIVVNYDCPPDPDSYLHRVGRAGRFGTKGLAITFVTSESDQQVMAAIQSRF
EVAVPELPDHIDPASYMTS
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgcacgacaacgacgaccttatcgactacgaggatgagcatgatctcgtgcca
aacagtggtgcaacggctgccggcaccaacggagctcctgctacaggtgcagtagcaggc
ggggacaatgacaaggacaaaaaaacgttttctggcattcattcaacagggtttaaggac
tttttgttgaagccggaactcttacgtgccattagtgaccttggcttcgaacatccctct
gaagttcaacaagagtgtatcccacaagccgtcttgggcatggatgtcctttgccaggcc
aaatcaggccatggaaagactgcagtcttcgttcttgcaacactccagcaattggagccc
gtaaatggcgaagtctcagtcatcgtcctttgccacactcgtgaactcgcttttcaaata
aaaaatgagtacacccgctttgcgaagtatatgcccgatgttcgcgtcagcacattttat
ggtgggacccctgtcgccaaagatgccgaaattcttcgagacaagaataaatgtcctcac
atcgtcgtcgcaactcctggtcgattaaatgcccttgcacgtgacaaggttttggacgca
aaaaacgtgaagcacttcgttctggacgagtgtgacaagatgcttgaacagcttgacatg
cgtcgtgacgtgcaagaaatctttcgagctactccccatcacaagcaagttatgatgttc
agtgctacattggcgaaggaaattcgcgtgacatgcaaaaagttcatggccaatccgctg
gaaattttcgtcgatgatgaaaccaagttgacattgcacggtttgcagcagcattacgtc
aaactagaagaagtgcagaaaaatagaaaattgaatgatctactggatacgctcgagttc
aaccaagttgtcatctttgttaagtccgttgctcgctgtattgagcttgacaaactgctt
gtttcgtgcaattttccgagtatctccattcactctggtctcactcaagaagaacgaatt
aatcgctatactgctttcaaggctttcgagaagcgcattcttgtggcaactgacattttt
ggtcggggcattgatgtggagcgtgtcaacattgttgtgaactatgactgccctccggat
ccagatagctacttgcatcgtgtgggtcgtgctggccgttttggcacaaaaggtcttgcc
atcacttttgtgacttcggagtccgatcagcaagtcatggcggcaattcaatctcgattc
gaggttgctgttccagaattacctgaccatatcgatccagccagttacatgacttcgtag
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