Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT111221
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Entry
AGABI1DRAFT111221 CDS
T03136
Symbol
AGABI1DRAFT_111221
Name
(RefSeq) hypothetical protein
KO
K13126
polyadenylate-binding protein
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03015
mRNA surveillance pathway
abp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AGABI1DRAFT111221 (AGABI1DRAFT_111221)
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI1DRAFT111221 (AGABI1DRAFT_111221)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT111221 (AGABI1DRAFT_111221)
03041 Spliceosome [BR:
abp03041
]
AGABI1DRAFT111221 (AGABI1DRAFT_111221)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AGABI1DRAFT111221 (AGABI1DRAFT_111221)
mRNA cycle factors
Stress granule specific factors
AGABI1DRAFT111221 (AGABI1DRAFT_111221)
Spliceosome [BR:
abp03041
]
Complex C
Other components
Complex C specific factors
AGABI1DRAFT111221 (AGABI1DRAFT_111221)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_10
RBD_DEAH11
RRM_RdRP1_2
RBD_DGKtheta
RBD_RDR6
RRM_3
PABC_AtC3H46
RRM_YTH1
YflT
DUF1494
PNPase
Motif
Other DBs
NCBI-GeneID:
18823221
NCBI-ProteinID:
XP_007326598
JGI:
Agabi_varbur_1_111221
UniProt:
K5XHA2
LinkDB
All DBs
Position
Unknown
AA seq
671 aa
AA seq
DB search
MSSPAVQQPESVPVVESSIPPSVPVPAPYNPPAPQASTAPSASLYVGELDPTVTEAMLFE
IFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEQLNYSLIKNRACRIMWSQR
DPALRKTGQGNVFIKNLDEAIDNKALHDTFVAFGNVLSCKVATDEHGRSKGYGFVHYETA
EAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQFTNLYIKNLDTEVTQEEFT
ELFTRYGNVTSSLVATDEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQK
KAEREDELRRSYEQAKLEKLSKYQGINLYIKNLEDDFDDDKLRAEFEPFGAITSCKVMRD
EKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQRNQ
IRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMMGYGQPGMMPPRIRYPNGQVPSMPP
VPGPYGQGPQPYGMPGYPPRGAPRPPVARGPGSSPTHPSVPMPRANGPAPNGGAARPAPQ
GAPAGSRAPPPGAPAPGRAPQPAYNKPQARPQGAPVTAQPAAAPQQSSLPNLTADQLAAA
SPMEQKQMLGEVIYMRIVPSQPELAGKITGMLLEMDNNELLALLDSEEAMNAKVQEANTV
LQEFTTKDPQQ
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgtcctctcctgccgttcagcagcccgaatccgtcccggtggtggagtcctccatccct
ccttctgtcccggtcccagctccctacaatcctcccgccccccaagcttccaccgctcct
tctgcctccctttatgttggtgaacttgaccctaccgttactgaggccatgcttttcgag
atattcaatatgattggacctgttgcgagcatccgagtctgtcgtgatgcagtcactcgt
cgttctctcggttatgcctatgtcaactacctcaatgccgccgatggcgagagggccctc
gaacaactcaactactcgctgatcaaaaaccgtgcatgccggatcatgtggtctcagcgt
gaccctgcccttcgtaagaccggacagggcaacgttttcatcaaaaatctggatgaggct
attgacaacaaagctttgcatgatacgtttgttgccttcggtaacgttttgtcctgtaag
gtcgccactgatgagcatggccgctcaaagggctacggcttcgttcattatgaaaccgct
gaggccgccgataatgccatcaagtctgtcaatggcatgttgctcaatgacaaaaaggtt
tatgttggtcatcatatctctcgcaaggaacggcaatccaagctcgacgaaatgaaggcg
cagttcaccaacctctatatcaagaatctggataccgaagtaactcaggaagaatttacg
gagctctttacaagatatggcaatgtcacctcctcgctcgtggccacagatgaagagggc
aaaagcaaaggattcggctttgtcaattacgaaagacatgaagaagcccaaagggctgtt
gacgagttacatgacactgatttgaaaggcaagaagcttttcgtcgctcgtgctcagaag
aaagcggagcgtgaggacgaacttcgccgttcttacgaacaagccaaactcgaaaagttg
tccaagtaccaaggcataaacctctatatcaagaatttggaagatgactttgatgatgac
aaactccgcgccgagtttgaacctttcggggcaatcactagttgcaaggttatgcgcgat
gaaaagggcacttccaagggctttggtttcgtttgcttctcttctcctgacgaagccacc
aaagctgtagctgagatgaacaacaagatgataggaaccaaacccctctacgtctccctt
gcacaacgtcgtgaagttcgcaggcaacagctcgaaagccagattgcacaacgcaaccag
atcagaatgcaacaagccgctgctgctggtgttcccggtggttacatcaacggtccgatg
tactaccctcctggaccaggcttccctcctcaaggtcgtggtatgatgggttatggtcaa
ccaggcatgatgccgcctcgtatccgctaccccaacggacaagtaccctcaatgccgccg
gttcctggaccttatggtcaaggtcctcagccctatggaatgcctggctatcctccccgt
ggagcccctcgtcctcccgttgcacgcggacccggttcttctcctactcaccccagtgtt
cccatgcctcgtgctaacggccctgctccgaatggtggtgctgctcgccctgccccccaa
ggcgcacccgctggtagtcgtgctcccccacctggcgcacccgctcctggtcgtgcgcct
cagcctgcctacaacaaacctcaggctcgtccccaaggagctcctgtgaccgcacagccg
gccgccgcccctcagcaatccagcctgcccaaccttactgccgaccagttggccgctgcg
tctccgatggaacagaaacaaatgcttggtgaggtcatctacatgaggattgtaccttcc
caaccagagttggccggcaagatcacgggtatgcttctcgagatggacaacaatgagctt
cttgcattgcttgactccgaggaagcaatgaatgcgaaggtccaagaggccaatactgta
ctacaagagtttaccaccaaggaccctcagcaatga
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integrated database retrieval system
