Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT111633
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Entry
AGABI1DRAFT111633 CDS
T03136
Symbol
AGABI1DRAFT_111633
Name
(RefSeq) hypothetical protein
KO
K15542
polyadenylation factor subunit 2
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AGABI1DRAFT111633 (AGABI1DRAFT_111633)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT111633 (AGABI1DRAFT_111633)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
AGABI1DRAFT111633 (AGABI1DRAFT_111633)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
WDR55
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
ANAPC4_WD40
WDR90_beta-prop_4th
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
PROPPIN
Beta-prop_WDR75_1st
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_Vps41
Beta-prop_IFT122_1st
eIF2A
Beta-prop_HPS5
Beta-prop_DCAF4
WD40_RFWD3
NBCH_WD40
Beta-prop_NUP159_NUP214
Beta-prop_RIG_1st
Ge1_WD40
B-prop_COPA_B_2nd
WDR54
WD_LRWD1
RMC1_N
Beta-prop_ELP1_1st
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
18823358
NCBI-ProteinID:
XP_007326966
JGI:
Agabi_varbur_1_111633
UniProt:
K5XI45
LinkDB
All DBs
Position
Unknown
AA seq
572 aa
AA seq
DB search
MIDGKLIKKTRPRRTVDYNGGMGRWALLRTLRPSPNYVPNLRPAIPFIIDLLPPKAYPDN
CSTSLCTKFIHTSTNKIRYPVHVVLWTPEGRRVLTGSTSGEFTLWNGLTFNFETILQAHD
TAICAMTFNHSGAYLASADKTGVIKYFEPNMNNLTAWQGSNSREAIRDISFSPDDQRFAT
ASDDSSVRIWSFAESRVESVLTGHGWDVKCAQWHPTKGIIVSGSKDNLIKFWDPRTGTCL
STLHPHKNTIQALSWSPNGNLVASASRDQTVRVFDIRAMKEFRVLKGHKKEVCSVAWHPV
HPILVSGGSEGSILHWDLSTPSPPASIATSPSTLSPTSLSSLTAAASSPRATLSQAHDAN
VWSLAYHPLGHLLVTASNDQTTRFWSRERPGEATSVEKPSDVMDLSGQDEDDDIFVPGFG
AAQSNFVGSGFGIGIGTSSNSGYSRSWGVKEEDDSQYRQSSAVGGAGMENGYANRSGGIG
QSDSGDDFIPGFSASSEPVSRPPQQQQYRDQDMYGGSMLDEFGRDVPHGTNGRDTRSRDD
RDGRDRDGDWGRGGGANGYNRSGRWGARRGRH
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgattgacgggaaactcataaagaagacacgacctcgtcggacggtggattataatggc
ggtatggggagatgggcactcctcagaacattaagaccaagccctaactatgttcctaac
ctgcgtcccgctataccttttatcatcgacttacttcctccgaaagcgtacccagacaat
tgctcaacgtccttgtgtactaagtttatccacacttcaactaataagatccgttacccc
gtccatgtcgttctttggacaccagaaggccgtcgcgtcctcacgggttcaactagcggc
gaattcaccctctggaatggtctaacattcaacttcgaaacgattctccaagcacatgac
actgcaatctgtgccatgacattcaaccattcaggcgcctatcttgcctcagcagataaa
actggtgtcatcaagtatttcgagccgaatatgaataatttgactgcttggcaaggctca
aattcacgcgaagccatccgagatattagctttagcccggatgaccagagattcgctacg
gctagtgatgattcgagcgttcgtatctggtcatttgccgaaagtcgagtggaaagcgtg
ctcacaggtcacggctgggatgtcaaatgcgcacaatggcaccctaccaaaggcatcatc
gtctcaggttctaaagacaacctaatcaaattctgggatccccgtacgggaacctgttta
tcgacacttcacccccacaaaaataccatccaggcgctatcctggtcacctaacggcaac
ctcgttgctagtgcttcacgcgaccagaccgtacgcgtttttgacatccgcgctatgaaa
gaattccgtgtgctcaagggccataagaaagaagtgtgctccgttgcctggcacccagta
cacccaattttagtttccggaggttctgaaggttcaatcctacattgggatctttcaacc
ccctcaccacccgcctccatcgccacttcaccgtctacactttctcccacatctctttcg
tctctaacagccgccgcatcttctcctcgtgccaccctttctcaagcacatgacgcaaat
gtttggtctcttgcgtatcatccattgggacacctacttgtgacagcttcaaacgatcaa
acaacacgattttggtctcgtgaaaggccgggagaagcaacttctgtagagaaaccatct
gatgtcatggacttgagcggtcaagacgaagacgacgatattttcgttcctggtttcggt
gctgcccaatccaatttcgttggatcaggttttggtatcggaattgggactagtagtaac
agcggttacagcaggagttggggggtaaaggaagaggacgatagtcagtatcgtcaatcc
tctgcggtgggtggagcggggatggagaatgggtatgccaaccgtagcggtggcattgga
caatccgactccggagacgactttattcctgggttcagtgcctcatccgaaccggttagc
cgcccaccgcaacaacagcaataccgggatcaagatatgtatggcggatctatgttagac
gaattcggtcgtgacgtaccccatggcacaaatggccgggataccagaagtagggatgac
agagatggtagagatagagatggcgattgggggcggggcggcggcgccaacgggtacaat
cggtctggtcggtggggtgccaggcgtggcagacactga
DBGET
integrated database retrieval system
