KEGG   Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT112946
Entry
AGABI1DRAFT112946 CDS       T03136                                 
Symbol
AGABI1DRAFT_112946
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
abp  Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018  RNA degradation
abp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:abp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    AGABI1DRAFT112946 (AGABI1DRAFT_112946)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AGABI1DRAFT112946 (AGABI1DRAFT_112946)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:abp03019]
    AGABI1DRAFT112946 (AGABI1DRAFT_112946)
   03041 Spliceosome [BR:abp03041]
    AGABI1DRAFT112946 (AGABI1DRAFT_112946)
Messenger RNA biogenesis [BR:abp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     AGABI1DRAFT112946 (AGABI1DRAFT_112946)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     AGABI1DRAFT112946 (AGABI1DRAFT_112946)
Spliceosome [BR:abp03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    AGABI1DRAFT112946 (AGABI1DRAFT_112946)
SSDB
Motif
Pfam: LSM YkzP
Other DBs
NCBI-GeneID: 18823823
NCBI-ProteinID: XP_007328727
JGI: Agabi_varbur_1_112946
UniProt: K5XD60
LinkDB
Position
Unknown
AA seq 131 aa
MLPLSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECY
IRGSTIKYLRVPDTLLDQVKEEQNRAREANRNSRGGHTGPNRGGRGAPIRGSRGGGRGGP
LRGGRGRGRGL
NT seq 396 nt   +upstreamnt  +downstreamnt
atgctgcctctatcccttctcagtgctgctcaaaacaagcccatgttggtcgagctcaag
aacggcgagactttcaacggccatctcgtgaactgcgacaactttatgaacatcaccctc
agagaggtgtatcagacaagcgccgatggggatagattctggaaactcaaggaatgctac
atcagaggaagcacgataaaatacttacgcgtcccagataccctcctcgaccaagtgaag
gaggaacaaaatcgcgctcgggaggccaacagaaattctcgcggcggacatacaggacct
aatagaggtggtcgtggtgcgcctatcagaggttctcgaggaggtggccgcggcggtccc
ctacgcggcggtagaggtcgtggacgtggattatga

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