Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT113249
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Entry
AGABI1DRAFT113249 CDS
T03136
Symbol
AGABI1DRAFT_113249
Name
(RefSeq) hypothetical protein
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03013
Nucleocytoplasmic transport
abp03015
mRNA surveillance pathway
abp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
09122 Translation
03013 Nucleocytoplasmic transport
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
03015 mRNA surveillance pathway
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
03041 Spliceosome [BR:
abp03041
]
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
03009 Ribosome biogenesis [BR:
abp03009
]
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
03012 Translation factors [BR:
abp03012
]
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
Enzymes [BR:
abp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
mRNA cycle factors
Stress granule specific factors
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
Spliceosome [BR:
abp03041
]
Complex C
Other components
EJC/TREX
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
Ribosome biogenesis [BR:
abp03009
]
Eukaryotic type
90S particles
Helicases
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
Translation factors [BR:
abp03012
]
Eukaryotic type
Initiation factors
eIF-4
AGABI1DRAFT113249 (AGABI1DRAFT_113249)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
UvrD-helicase
TniB
DUF1871
Motif
Other DBs
NCBI-GeneID:
18823929
NCBI-ProteinID:
XP_007329291
JGI:
Agabi_varbur_1_113249
UniProt:
K5X9V6
LinkDB
All DBs
Position
Unknown
AA seq
396 aa
AA seq
DB search
MAGINAGDEKLVFESSEAVSVVATFDDLALKEDLLRGIYAYNFEKPSAIQQRAILPITQG
RDVIAQAQSGTGKTATFSISILQSIDVTVRETQALVLSPTRELATQIQSVVLALGDYMNV
QCHACIGGTSIGEDIRKLEYGQHVVSGTPGRVFDMIRRRSLRTRNIKMLVLDEADELLNK
GFKDQIYDVYRYLPPATQVVLLSATLPYDVLEMTTKFMTDPIRILVKRDELTLEGIKQFF
VAVEKEDWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRASNFTVSSMHGDMVQKE
RDAIMAEFRSGTSRVLITTDVWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKG
VAINFVTVDDVRILRDIEQFYSTQIDEMPVNAAELI
NT seq
1191 nt
NT seq
+upstream
nt +downstream
nt
atggccggaatcaacgctggagacgagaaactcgtgttcgagtcctcagaggccgtctct
gtcgtcgccacgttcgacgacctcgccctcaaggaagaccttctccgcggcatctacgcg
tacaactttgaaaagccctccgccatccagcagcgcgccatcctccccatcacacaaggc
cgcgacgtcattgcccaagcccagtccggtaccggtaaaaccgcaaccttttccatctcc
atcctccagtccatcgatgtcaccgtccgcgaaacacaggccctcgtcctctcccccacc
cgcgaactcgcaacccagatccaatccgtcgtgctcgcactgggtgactacatgaatgtc
cagtgccatgcctgtatcggcggaacgtccataggcgaagacattagaaaactcgagtat
ggccagcacgttgtctctgggacacccggtcgtgtctttgacatgatcaggcgccgcagt
ttacggacacgaaacatcaaaatgctcgtccttgatgaagccgacgagctcctcaacaag
ggtttcaaagaccaaatttacgacgtctatcgctacctcccccctgccacccaggtagtc
ctcctcagtgccacgcttccgtatgacgtgctggagatgaccaccaaattcatgacggac
cctatccggatcctcgtcaagcgtgatgaactgacactcgagggtataaaacaattcttc
gtcgcagtagaaaaggaggactggaagtttgataccctctgcgatctttatgacaccctg
accatcactcaagctgtcatcttctgcaacactcgtcgcaaggttgactggctgactgaa
aaaatgcgtgcttcaaacttcacggtatcatcgatgcacggtgacatggtccaaaaagaa
cgtgacgctatcatggccgaattccggagtggtacatcacgggtcttgattaccaccgac
gtttgggctcgtgggattgacgtgcagcaggtttccctggttattaattatgatcttcct
gccaaccgtgaaaactatatccataggattggtcgatcaggtcgtttcggccgcaagggt
gtagccatcaacttcgtgaccgtcgatgatgttcgtatccttcgcgatattgaacaattc
tatagcactcaaattgatgaaatgcctgtcaatgctgccgagttaatctag
DBGET
integrated database retrieval system
