Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT113348
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Entry
AGABI1DRAFT113348 CDS
T03136
Symbol
AGABI1DRAFT_113348
Name
(RefSeq) hypothetical protein
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
AGABI1DRAFT113348 (AGABI1DRAFT_113348)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abp03021
]
AGABI1DRAFT113348 (AGABI1DRAFT_113348)
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT113348 (AGABI1DRAFT_113348)
Transcription machinery [BR:
abp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
AGABI1DRAFT113348 (AGABI1DRAFT_113348)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
AGABI1DRAFT113348 (AGABI1DRAFT_113348)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_C
CID
zf_PCFS4
DUF684
Prion
HNF-1_N
Motif
Other DBs
NCBI-GeneID:
18823965
NCBI-ProteinID:
XP_007329380
JGI:
Agabi_varbur_1_113348
UniProt:
K5WXE4
LinkDB
All DBs
Position
Unknown
AA seq
642 aa
AA seq
DB search
MSLYSQNYYGPSYGGPSYAAPAAYQYQYPQQPGHPQPIPHPPPNPVFIDPAAFRRDYSSR
LDQLQFNSRPVIQSLSFYAQDYSRYADIVAQCLDSHIRKVPPWMKLPAFYLLDAISKNVY
EPYARVFASFVIPLFLDTYRMVDDGTRSKMDEMLLTWRTGAPNGKELFGLGPQMAIERGI
WGDQAGPGQITKTQVMSELNFALQAKERAIQANPNDIATKHHIQVLLQLRSLVEAGVSQE
ELTQILTQLRGMIRSSAAQPPVPSQPQWSVPQLPLPAPNTYPSVPTGFPSVSSAFPAAKT
EATQSILPPASVSTSSTSVDTAQLNITNILSSLMKSGLVSSSAEDPTALKTESVESEEAK
SASSSMEDMNAIKEAQVDYRKRILAEKMEAHLVENSLDDPHVPIPDLLYDYLSLQCQQCG
MRYPDTTLGKKRLEDHLDLHFKQNRKLNQSFGRGHDRSWFTSVEDWVQELSTGQSQRSLR
TRDADEKVAVPTEKVRSQTNLKSQYVTVPPGDEAKPLSCAICKEVLQIEFLEDEEEWVWR
NAVKKDDRVYHATCHAEAAAANNLVSRLKNETGIGSRGSTPEVVSSRSTPPLVRATRSPS
RSPTSSSSKMAGVKRKIEHDGPADMNDWDQTPPAKKLALAQS
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgtcactttattcgcagaattattatggtccatcatatggtggaccttcgtatgctgct
ccggccgcatatcagtaccagtatcctcagcagcctggtcatcctcagcctatacctcat
ccccctccaaaccctgtcttcattgacccagcagcttttcgcagggattatagcagtcgc
ctcgatcaactgcaattcaattctcgtccagttattcaaagcttgtctttttacgcgcaa
gattattcccgatacgcagatatcgtggcacaatgtttggatagtcacatccggaaggtc
cctccctggatgaagctgcccgccttctatctcctcgacgcgatctcgaagaatgtctat
gagccgtatgctcgtgtattcgcatccttcgttatccccctttttctcgacacttacagg
atggtcgatgatggcactcgcagcaaaatggacgagatgctactgacctggcgcaccggc
gcgcccaatggaaaagaattattcggtcttggaccccaaatggccatcgaacggggcatc
tggggcgatcaagctggtcctggccagattacgaagactcaagtcatgagtgagctaaat
tttgctcttcaagcaaaagaacgagccatccaggccaacccgaatgatattgccacaaag
catcacattcaagttcttcttcagttgcgaagcttagtagaagcgggtgtatcccaagag
gaattaacgcagatcctcacccaactccgtggaatgattcgttcatcggctgctcaaccg
ccagtcccttcccaaccccaatggtctgttccacagcttccattaccggcccctaataca
tatccttctgtcccgaccgggtttccttcggtttcatccgcttttcctgcggcgaagact
gaggctacacagtctatattgccacctgcctcagtgtctacatcctcgacctctgttgat
acagctcagctcaatattactaacattttatcatcattgatgaagtccgggcttgtttcg
tcctccgcggaagaccccactgctttaaaaacagaatcagtagaatcagaagaagcaaaa
tctgccagctcgtcgatggaagatatgaatgcgattaaggaggctcaggtcgattaccgc
aagcgaattctagccgagaagatggaggcacatttagtcgaaaactctttagatgatcct
catgttcctatcccggacctactctatgattatctctcgctccaatgtcaacaatgtgga
atgcgataccctgatactactttaggaaagaagcgactggaagatcatttagacctacat
ttcaagcagaaccgcaagttaaatcaaagctttggtcgaggacatgaccggagttggttt
accagcgttgaggattgggtccaggaactctcaactggtcaaagtcagcgatctctccgg
acgagagacgctgacgagaaggtcgccgttccgaccgagaaagtgcgatcacaaactaat
ctaaagtcacaatacgtcactgttccacctggtgatgaagctaagcctttatcgtgcgcg
atttgtaaagaagtattacagattgaatttcttgaggacgaagaggaatgggtttggcgg
aacgcagttaagaaagatgatagagtataccatgcaacatgtcatgcagaggcagcagca
gcaaataatctagtgtcgcgattaaaaaatgagacaggaataggaagtcgaggtagtaca
cctgaggtagtatcgtcgcgttcaacgcccccgcttgtgagagcaacaaggtcaccctca
agatcaccaacatcgtcgtcatccaaaatggccggtgttaaacgcaagattgaacatgac
ggacccgccgacatgaacgactgggaccaaacgccacctgcaaaaaagttggctttggca
caatcatga
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integrated database retrieval system
