Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT115242
Help
Entry
AGABI1DRAFT115242 CDS
T03136
Symbol
AGABI1DRAFT_115242
Name
(RefSeq) hypothetical protein
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI1DRAFT115242 (AGABI1DRAFT_115242)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT115242 (AGABI1DRAFT_115242)
03036 Chromosome and associated proteins [BR:
abp03036
]
AGABI1DRAFT115242 (AGABI1DRAFT_115242)
Enzymes [BR:
abp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AGABI1DRAFT115242 (AGABI1DRAFT_115242)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
AGABI1DRAFT115242 (AGABI1DRAFT_115242)
mRNA degradation factors
5'-3' decay
Decapping complex
AGABI1DRAFT115242 (AGABI1DRAFT_115242)
Chromosome and associated proteins [BR:
abp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
AGABI1DRAFT115242 (AGABI1DRAFT_115242)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
AAA_19
CMS1
Motif
Other DBs
NCBI-GeneID:
18824644
NCBI-ProteinID:
XP_007331967
JGI:
Agabi_varbur_1_115242
UniProt:
K5XR34
LinkDB
All DBs
Position
Unknown
AA seq
500 aa
AA seq
DB search
MSQPSSSSTPHDSAWKTGLRPPPRDSRPQTEDVTATKGLEFEDMSIRRELLMGIFEAGFE
KPSPIQEEAIPFALTKRDILARAKNGTGKTAAFVIPSLQQIDINKHKIQALLLVPTRELA
LQTSQVCKTLGKHMGIQVMVTTGGTTLKDDILRLSESVHVLVGTPGRILDLAGKGVADLS
ECPVFVMDEADKLLSPEFAPVMEQLLSYLPSERQVMLFSATFPMIVKTFKDKHMRSPYEI
NLMDELTLRGVTQYYAYVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKVTELG
YSCFYSHAKMLQSHRNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFDFPKNSETY
LHRIGRSGRFGHLGLAINLVTYEDRFNLYKIEQELGTEIQPIPQTIDRTLYVAPGSSEEQ
HQKPQPQSQQPQQRQAAPSPSPAAAAAPRAGQPSLPAPQSISQQPAFNGQASARANGGLP
PQAQQMRGQPTYRGGVPVAR
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgtctcaaccatcttcaagctcgaccccccacgactcggcttggaaaacgggtctgcgt
cccccacccagggactctcgcccacagacagaagatgtcaccgcaaccaagggcctcgaa
ttcgaggacatgtccatcagacgtgaactcctcatgggcatcttcgaggccggcttcgaa
aagccctctcccatccaggaagaagccatcccctttgccctcaccaaacgcgacatcctc
gcccgtgccaaaaacggcaccggaaaaacagccgccttcgttatcccctccctccaacag
attgacattaacaaacacaagattcaggcccttctcctcgttcccacccgagagcttgcc
ctccagacttcccaggtgtgcaaaaccctaggcaaacacatgggcatccaggtcatggtt
accaccggtggtaccaccctcaaggacgatatcttacgtctttcagagtccgttcatgtt
ctcgtcggaacccctggccgtatcctagatcttgccggcaagggtgtagctgatctcagc
gaatgccccgtattcgttatggatgaggcggataagctcctctcccccgagtttgcccct
gtcatggagcagctcttgtcctatctgccctcggaacgccaggtcatgctcttcagcgca
accttccccatgatcgtcaagacattcaaggacaagcacatgcgatccccgtacgaaatt
aatctcatggatgaacttacgcttcgaggtgtcacccaatattatgcctatgtcgaagaa
cgacaaaaggtccactgtctcaatactcttttctccaaacttcaaattaatcaatctatc
attttctgcaactctaccaatcgagtcgaactcttggccaaaaaggtcaccgagcttggc
tactcgtgcttttattcgcatgccaaaatgctccaatctcaccgcaaccgtgtctttcat
gatttccgtaatggcgtttgtcgcaacctcgtctgttccgacctcctcactcgcggtatc
gatattcaagccgtaaacgtggtgattaactttgatttccccaagaatagcgaaacctac
cttcatcgtatcggccgctctggacgctttggtcatctcggcttggcgatcaacttggtg
acgtatgaagacaggttcaacctctacaagatcgagcaggagctgggcactgaaatccag
cctatccctcaaacaatcgatcgaactctatatgtggcgcccggttccagtgaagaacag
caccagaagcctcaaccccaatcccaacaaccacaacagaggcaggcagcaccttctcct
tctcccgctgctgctgctgctccaagagctggacaacctagccttccggctccacagtca
atttcccaacaacccgccttcaatggtcaggcttccgcgagagcaaatggcggtttaccc
cctcaggcacagcagatgcgtggacaacctacgtatcgtggtggtgtgcctgtggctcgg
tga
DBGET
integrated database retrieval system
