Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT118214
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Entry
AGABI1DRAFT118214 CDS
T03136
Symbol
AGABI1DRAFT_118214
Name
(RefSeq) hypothetical protein
KO
K12571
PAB-dependent poly(A)-specific ribonuclease subunit 2 [EC:
3.1.13.4
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI1DRAFT118214 (AGABI1DRAFT_118214)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT118214 (AGABI1DRAFT_118214)
Enzymes [BR:
abp01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
AGABI1DRAFT118214 (AGABI1DRAFT_118214)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
AGABI1DRAFT118214 (AGABI1DRAFT_118214)
mRNA degradation factors
3'-5' decay
Pan complex
AGABI1DRAFT118214 (AGABI1DRAFT_118214)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UCH_1
RNase_T
PAN2_N
UCH
WD40
ANAPC4_WD40
Motif
Other DBs
NCBI-GeneID:
18825415
NCBI-ProteinID:
XP_007326700
JGI:
Agabi_varbur_1_118214
UniProt:
K5XH45
LinkDB
All DBs
Position
Unknown
AA seq
1119 aa
AA seq
DB search
MSTSYRPTNPVSAGHPLPSSVTALSFDPVSDILWAGDNNGVVTGIYTSRGYRGVFFPVGG
DFAVSKISAGDNYVRALGSASEGLGSWAKGGMNKWFHRSSTSLTTFSDSNNSSHSLVVST
AGLEVLFLNSMTGNVVRQVPTPSLITHLQFSSSALISGSADGYLRLHDPRTGMARSGGSE
NQVVKAHQCSIQGLQTTGNYIFTIGQSERQSRPIPDPLVKVYDLRTMRALPPMPFSSNPA
FINVLPKRSSSIAVVSDQGLIHVMDASNISAASEFYQLNVTSYITSMSISPTGTFMAFGD
ADGTIHMMSQAEEGSNMPFNGFDGQPITWMDTPEQIPEIDWTESTPLNTIGLPYFDSPLF
SSWTPLLASTNVGYPPPQKIPAQILGTMKVNDNVAYAAMPKELKGRRNVSSATSRKPNGR
FRSEVPVMYRKVEIEYSKFGVEDFDFEFYNKTSYSGLETHILNSYTNPIVQVMHYLWPIR
RLAKSHITTNCPRENCLLCELGFVVRMLEDAKGTNCQTSNFCKAIGILAQTANAIELIDY
GRDSADVDYAHKIQVFNRFLIDQLSSEGNTFPSNTAVVRRPPLPTVHGVNFPSPVTQLMG
IDGKNVMTCMTCKKTREKEGLTHIVDLMYPRKQTSNDQPSSADFSAVLRNSLLRNVSHKA
TCPACKHLTISTSKRYIPSQLLPPILVVNANVYNEETWEYWQDGKNKSFLQPQVNIHGQI
DGNDDPEVASYVIRAIVVQVKVKNKPSHLVAVIKVPEAEHNDLTSPWFIFNDFVVNNVSE
GEALSFPDRWKVPAIVYLERSNVQSTLDFGQLPDQLDPSILYQDTSIALCRDRSLVRHDP
LRPDELPTPGTVVAIDAEFVKMQQEESEFRSDGSTKVIRPARLSLARVSVLRGDGLRQGI
PFIDDYIHTSEIIVDYLTEFSGIKPGDLDPALTSMTLIPLKVAYKKLRFLVDRGCIFIGH
GLAKDFRIINIYVPPHQVIDTVDLYFLKNRQRRLSLRFLTWFVLDEHIQQDTHDSIEDAR
CALKLYNAFQSFEEQGVFDQKLDELYKEGRQYNFKPPAIPDQLATPVPEHTLSPPPPQSQ
YFSHPGPIFDPQFAQIYTAAHSMTGYPLQRPPTNRNWRR
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtcatatcgacctacaaacccggtctcagcgggacacccgctaccgtcttcc
gtcacagcgctctccttcgatccggtgtcagatatcctgtgggcaggcgacaataacggt
gttgtaacaggtatctacacttcgcgtggctaccgcggcgttttcttccctgtaggcgga
gactttgcagtgagcaagatatccgccggtgacaactatgtacgagcacttggatctgcg
agtgaaggtttaggatcttgggcgaagggagggatgaataagtggtttcatcgatcatct
acatctctcacaaccttttcagattcaaataactcgtctcattccttggttgtatcgaca
gcaggacttgaagtgctatttctcaattccatgacggggaacgtcgtacgtcaagtgccg
accccttcattgataacccatctccagttctcgtcatcggcacttatatctggttctgcg
gatggctatcttcgacttcatgatccgagaacaggtatggcacgctcaggtggaagcgaa
aaccaagtcgtgaaagcgcatcaatgttcaatacaaggccttcagaccactggcaattat
atatttacaattggacagtcagaaagacaatcacggccgattccagatccactggtcaaa
gtttatgatttgcggactatgcgggcgcttccacctatgccattttcttcaaaccccgcc
ttcatcaatgtcctgcccaaacggtcttcgagcatagctgttgtttctgaccaaggctta
attcatgtgatggacgcgtcaaatataagtgccgcaagtgaattctaccagctcaatgtt
acctcttatataacatcaatgtccatttcgccgacaggcacttttatggcattcggcgat
gcagatggcacaatacacatgatgtcgcaagctgaagaagggagtaacatgccatttaat
gggttcgatgggcagccgattacctggatggatacaccggagcaaatccccgaaatagac
tggacagagtcaacaccactgaataccataggtctaccttatttcgattctccactgttt
tcttcgtggacgcccctcctagcatcaaccaacgtaggctatcctcccccacaaaaaata
cccgcacagatactgggaacaatgaaagtcaacgataatgttgcctacgctgccatgccc
aaggagcttaaaggtcgtcgaaatgtgtcgagtgctacgtcgcggaaaccaaacggtcgc
ttcaggagtgaagtgcctgtgatgtatcgcaaagttgagattgaatactccaagttcggt
gtcgaggattttgacttcgagttttataacaagacctcttatagtggactggaaacgcat
atactcaattcctatacgaatcctatcgttcaggttatgcattacttgtggcctatccgg
cgtcttgccaagtcacatatcacgaccaactgtccacgagaaaactgcttgttatgtgaa
cttggtttcgttgtgcgtatgttggaagatgccaaaggaacgaactgtcagaccagtaat
ttttgcaaagcgattggtattttggcacaaaccgcaaacgctatcgagcttatcgattat
gggagagactcagccgatgttgactacgcccacaagattcaggtgttcaacagattccta
atcgatcaactgagcagtgaaggaaatacgtttccctcgaataccgctgtcgtgaggcga
ccaccgttgcccaccgttcacggagtcaattttccatctcccgtcacgcaactaatggga
atagatggtaaaaatgtcatgacctgcatgacctgtaaaaaaacgcgcgaaaaagagggt
ttaacccacatcgttgatctcatgtatcctcggaagcaaaccagcaatgaccaaccgagt
tcggctgatttctccgccgtcttgcgcaactcgctcttgcgaaatgtttcacataaggcg
acatgccccgcttgcaagcatctcaccatttccacttctaaacgatatatcccctcacag
cttcttcctcctattttggtcgttaatgccaatgtgtacaatgaagagacttgggagtat
tggcaggatggcaaaaacaagtcttttttgcaacctcaggtcaacatccatggtcaaatc
gatggaaacgatgaccccgaggttgcctcctacgtcattagggcaattgttgttcaagtg
aaggtcaaaaataagccctcgcatttagtggctgttatcaaagttccggaagcagagcac
aatgacctaacgagtccctggttcatcttcaatgattttgtagtgaataatgtgtccgaa
ggtgaagctctcagctttccggaccgatggaaggttcctgcaattgtttaccttgaaaga
tctaacgtgcagtctactttggacttcggacagcttcctgatcaacttgacccatccatc
ctttatcaagacacctctattgccttgtgccgagatcgttcgctcgtgcggcacgatcca
ctgcggccagacgagctgcccacaccagggactgtggttgccattgatgcagaattcgtc
aaaatgcagcaggaagaatcggaattccggtcagatgggagtacgaaggtcattcgacca
gcgaggttgagtctggcccgagtatcggtcttgaggggcgatggacttcgtcaaggaatc
ccatttattgacgactacatacacaccagtgaaatcatcgtggactacctgacagaattc
tccggtatcaaaccgggtgacctcgacccagccttgaccagcatgaccctgataccgttg
aaagtggcgtataaaaagctccgattcctggtggatagaggatgcattttcataggccac
ggcctcgccaaagatttccgtataatcaacatatacgtgcctccccaccaagtcatcgac
actgtagatctatatttcttaaaaaatcgtcagcgtcgcttgtctttgcgtttcctgacg
tggttcgtccttgacgagcacatacaacaagatacacatgactcaatagaagatgcgcgt
tgcgccctgaagctttataatgcttttcaatcatttgaagagcaaggagtattcgaccaa
aaattggatgagctttataaagagggtcgacaatataacttcaagcctccagcgataccg
gatcaacttgccactccagtgcctgaacatacactctcgcctccaccaccacaatcacag
tacttcagccaccctggacctatctttgacccacagttcgctcagatctacactgctgct
cactcgatgacaggataccccttgcaacgcccccccacgaatcgtaattggaggagatga
DBGET
integrated database retrieval system
