Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT50405
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Entry
AGABI1DRAFT50405 CDS
T03136
Symbol
AGABI1DRAFT_50405
Name
(RefSeq) hypothetical protein
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI1DRAFT50405 (AGABI1DRAFT_50405)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
abp03041
]
AGABI1DRAFT50405 (AGABI1DRAFT_50405)
Enzymes [BR:
abp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI1DRAFT50405 (AGABI1DRAFT_50405)
Spliceosome [BR:
abp03041
]
Complex C
Other components
Step II factors
AGABI1DRAFT50405 (AGABI1DRAFT_50405)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_19
AAA_30
SLFN-g3_helicase
ATPase
T2SSE
ABC_tran
AAA_16
PhoH
AAA_24
SRP54
NACHT
Motif
Other DBs
NCBI-GeneID:
18829918
NCBI-ProteinID:
XP_007325006
JGI:
Agabi_varbur_1_50405
UniProt:
K5X659
LinkDB
All DBs
Position
Unknown
AA seq
1166 aa
AA seq
DB search
MDSDVLEPPPVRQGGLQRLDTRHTFQRPTRPLEPPTPRTSILGLDKLALEKRTAKENAIS
ENGRKRPRIERDDEPVFKVPSLPASRSTARQRGEETPSNPGGISETARRRLEEHRKNKER
QREGITAVNESRKDGPKGLGDFQRRSNRDRARGWGGGRYAQNQRGMAWDATPQSVREAPS
IRVPNVGWDSTPGDAHGQDGFGWGAAGNRRWDAPTPRVGRGDSPEGGDTGLDIKEWEEEQ
IRLDRDWYTGTEDSGIAGDEEHNPLAQYEDLSLLKQAEIATKQTKKISARQAQYNADNDL
WEANRMVTSGVATRKGVDLDFEDESESTVHVMVHDLKPPFLDGRTVYTKQLDPINPIRDP
TSDMAIFAKKGSALVKEKREQAERAKAAAKLAALGGTSLGNIMGVKDEEAEAEAEADRNA
QKAKTSGEKENYKGDSKFAEHLKTSAGVSVFARSRTLKEQREYLPAFACREDLMKVIREN
QVVIVVGETGSGKTTQLAQFLYEDGYCSHGIIGCTQPRRVAAMSVAKRVSEEMQCKLGST
VGYAIRFEDCTSAETKIKYMTDGVLLRESLNEGDLDRYSVIILDEAHERSLSTDVLMGLL
RKILSRRRDLKLIVTSATMNSEKFSYFYGHAPCYTIPGRTFPVEIYPSKSPCEDYVDSAV
KQVLQIHLSLPPGDILVFMTGQEDIEITCQVVEERLAQLDEPAPLAVLPIYSQMPADLQA
RIFEPTADGRRKVIVATNIAETSLTVDGILYVVDAGYSKLKVYNPKVGMDALQITPISQA
NAGQRTGRAGRTGSGYCYRLYTEMAYRNEMFENTIPEIQRTNLANTVLLLKSLGVKNLLE
FDFMDPPPQANILNSMYQLWVLGALDNVGDLTPDGRKMSEFPMEPSMAKMLIASVDYKCS
SEMLTIVSMLSVPSVFYRPKERMEEADAAREKFNVPESDHLTLLNVFNQWKSHGYRDDWA
MRHFLHPKLLRKSREVRAQLEDIMKFQKMNIISAGTDFDVIRKAIATGYFHQAARVKGIG
EFVNIRSGLPTHLHPTSALYGLGYTPSYVIYHELILTSKEYMTQVTAIDPYWLAELGSVF
YSVKEKNFDERGNRRQADREFSKRVELEAEMARQREENAKRVEEEEQTSKAASGSSSKII
VPGTPRHTGIGAGARLNATPRRRVGI
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atggatagtgatgtcctggaaccaccacctgttcgtcaagggggtctgcaacgcttggat
acgcgacatacgtttcaaaggccgacccgcccgcttgaaccacccacacctcgaacttcg
atacttgggttggataagttggctctagagaagagaacagccaaagaaaatgccatcagt
gagaatggtcgtaagaggcctcgaatagagagggacgatgagccggttttcaaagtaccg
tcactacccgcgtctagatctactgcgcgtcaacgaggtgaagaaacgccttccaatccg
ggaggcatatccgaaacagccaggaggcgtctggaggagcataggaagaacaaggagaga
caaagagagggcataacagccgtcaatgaatcgcgtaaggacggccccaagggcctcggt
gattttcaacgacgttcaaatcgagacagagcccgaggttggggcggtgggaggtatgca
caaaatcagcgaggtatggcttgggatgcgactccacagtctgttcgtgaagcacccagc
atacgcgtgcctaatgtaggctgggactccactcctggtgatgctcacgggcaggatggg
tttggatggggcgcagcgggaaatagacggtgggatgcaccaacaccgcgtgtaggcaga
ggcgacagtccggaaggcggagatactggtttagatatcaaggagtgggaagaggagcag
ataaggttggatcgagactggtatacaggtacagaggacagtggtattgctggagacgag
gaacacaacccccttgctcaatatgaagatttaagcctccttaaacaggcggaaatagca
acgaagcaaacgaaaaaaatatccgctaggcaagcacaatacaatgccgacaatgaccta
tgggaggccaatcgtatggtaacttcgggtgttgctactcgaaagggcgtcgatttagac
ttcgaggacgagtcagaatcaaccgtacacgtcatggtacatgacctcaaaccaccgttc
ctggatggccgtacggtgtatacgaagcaacttgaccctataaaccctattcgagatcct
accagcgatatggccattttcgcaaagaaaggcagtgccctagtcaaggagaaacgcgaa
caggcagagcgcgccaaagcagcggctaaattagcggctcttggaggtacttcactgggg
aatattatgggagttaaagacgaggaagcggaggctgaagctgaagcggatagaaacgca
caaaaagcgaagacaagcggggaaaaggagaattacaagggtgattctaagttcgcggag
catctcaagacttcagctggcgttagtgtgtttgctagatcaagaactttaaaggagcag
agggagtacctgcctgcgtttgcctgccgcgaagatctcatgaaggtaattcgggaaaac
caagtcgtcatcgtcgttggcgaaaccggttccggaaagacaacgcagttggcacaattc
ttgtatgaggatggctattgttcccatggcatcattggttgcacacaacctcgtcgtgtc
gctgcaatgtcggttgcgaagcgagttagcgaggaaatgcagtgtaaactagggtcgacg
gttggttatgctatccgtttcgaggattgcacgtctgccgagacgaagatcaaatatatg
acggatggtgtgttacttcgagaatcgctaaacgaaggcgacttggaccgttacagcgtc
atcattttggacgaagcgcacgaacgttccctcagtactgatgtgctaatgggtttactc
aggaaaattctatctcgccgaagagaccttaaacttattgtgacgtctgcaaccatgaac
tccgagaagttctcatacttctacggccatgctccttgctacacaattcccggacgaacg
ttccctgttgaaatttatccttccaagtcaccatgtgaagactacgtcgacagcgccgtt
aaacaggtccttcaaattcacctatcattgccgcctggagatattttggtgttcatgaca
ggccaagaggatatcgaaattacttgccaggttgttgaagagcgtttagcacaattggat
gaacctgccccccttgcagtcctgcctatctactcgcagatgccagcagatctacaggct
cggatttttgagccgactgctgatgggcggcggaaagtgattgttgctactaacatcgct
gagacgtcattgactgtggacggtattctttacgtcgtggatgctggctactccaagctg
aaggtgtataaccccaaggtcggtatggacgcactccaaattactcccataagccaggca
aacgctggccagcgaactggtcgtgccggacgcacaggtagtgggtattgctaccgcctc
tataccgagatggcctatcgaaatgagatgttcgagaacacaatccctgaaattcaacga
acaaacttggctaacacggtgctactcttgaaatctctcggcgtcaagaacttgctcgaa
ttcgatttcatggacccaccaccacaagcaaatattctcaattccatgtatcagctctgg
gttcttggtgctcttgacaacgttggagatttgacgcctgatggaaggaagatgtcagag
tttccgatggagccatcgatggcgaagatgctcatcgcgtcggtggattataagtgctca
tcggagatgttgacgatcgtttcgatgctttcggttcccagcgttttctacagaccgaag
gaacgaatggaggaggctgacgcagcgcgggagaaattcaatgtacctgagagtgatcac
ctaacgcttttgaacgtttttaatcaatggaagagtcatggttatcgtgacgattgggcc
atgaggcatttcttgcaccccaagttgcttcgaaaatcccgtgaagtacgagcgcagctt
gaagatatcatgaagttccaaaaaatgaatatcatttccgctggaaccgactttgacgtt
atacgaaaagcgatcgcaacaggctatttccaccaagccgcgagagtgaagggaattggc
gagttcgttaatattcgttcaggtctccccacgcacctacatcccacgagtgcattatac
ggacttggatatacgccttcatatgtcatttaccacgaactaatcctgacatcaaaggaa
tatatgacgcaagttactgcgattgacccgtattggctcgcggagctcggttctgtattc
tactcagtcaaggagaagaattttgatgagagagggaaccgaagacaagcggatcgcgaa
ttttctaaacgggttgaacttgaagcagagatggctcgtcagcgagaagagaatgcaaag
cgcgtggaagaagaggaacagacttccaaggctgccagtgggagtagttcgaaaattatc
gtaccaggaactccccgacatacgggcataggtgctggtgcacggctcaatgcgacacca
agacggagggtggggatttga
DBGET
integrated database retrieval system
