Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT55998
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Entry
AGABI1DRAFT55998 CDS
T03136
Symbol
AGABI1DRAFT_55998
Name
(RefSeq) hypothetical protein
KO
K12600
superkiller protein 3
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI1DRAFT55998 (AGABI1DRAFT_55998)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT55998 (AGABI1DRAFT_55998)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
AGABI1DRAFT55998 (AGABI1DRAFT_55998)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_2
TPR_CcmH_CycH
TPR_1
TPR_16
TPR_17
TPR_8
TPR_19
TPR_14
TPR_12
TPR_11
TPR_9
ARM_TT21_5th
TPR_7
TPR_22
ANAPC3
TPR_Slam
DUF6584
TPR_15
TPR_20
DUF4192
ARM_TT21
BTAD
Motif
Other DBs
NCBI-GeneID:
18830149
NCBI-ProteinID:
XP_007328070
JGI:
Agabi_varbur_1_55998
UniProt:
K5W228
LinkDB
All DBs
Position
Unknown
AA seq
1417 aa
AA seq
DB search
MSFVKSKLKAARESIGHKNFSAARDAARQVLEYEPENYTAHVFLGLSLLNLGETDESEQV
YRRAASLSPDQILAWQGLSQLYEKIDNPQRLLDTLKTIAQLHQKADDPIKTAETLQKIID
ITRSLGDKKQVPFYHVLSGLDPPDPTNPTATAIFHVQSTVHNELPVLEEIVALIEAQETS
FMEKEFESRRTRLNAGSLKEVRNEIGREIWAESQLPALYNRISNHPGSTDDLRRGTESKL
LRYKVNYLHALPLTEKYQMQKHELSKEIDELIRGIILLKIPDELAWTLYVEEQDCEAMAD
YDYSVMKQLIEVLPNSVLAEAFQCYYEYISEGLSEQGNEGEEDEEKASKHGEDPFDGIMN
VFARAQGSLTVSRIVGEVYLNEEDYQNASNVAKTALELLQKVEQESGKKLRKTQVGLQSI
LASALTNLFPPKHHQRASCILHEALSISPENIRCLISQAYILRTAQDWIPAAQLYQKIVE
LLPGDLEDGLEAKEDQAWCHWQATQELSDIEKMKDVLDDLKNLDGRSHNAARCLWRIGKC
YWDLDGIQREEAYSFFIASLKQDSSFAPAFTSLGFFYADVASPSDPVRASKCFQKAFELD
PRENLAARKLAEGFAEDREWDLVEVVARRTIEGEGGISPDSAPSVVEFIPTNSWAWKAVG
LVEMNRENYLPAIQAFQNVLRAEPEDYLSWSRLGEAYAKAGRQAAAIKALHHALELDPQN
WLCSFLIAELKSKTGLCQEAIYIFEELLTQRPDELSVIVALAQAHFALGQTQLQGGFQIR
AEASFLDAIEAAMLILERYPGFRGVSWKIISDAALQLCLRTKFHNDSRVAKLSSALHLLL
SKEHKTDSRSPFAIESSGPNALLSISIQACHLRVALNQSSNVARGAAWYDLAIGLKTWCT
RVPDVGLDTKSGVIEAMTNALKEEPTNELYWSTYGNVQFSDHPKVAQHAYIKALELHPKD
VATWTNLGLLYYHHGDLELANEALYRAQVVDPDYPLAWLGQALVAAGNGHEFDAYSLLTH
AITLTPNLPDIDAEYGIRAFYESKLSKRRTEDEADPIPCFFALDRYCSRRPDDPLELHLF
ALICERIGHIDLAISSVERCISILEAAYEESENSVVERQYTIASTTLGRVLLSVGQHERS
LESFQTSLGLLAGNEDGEEVTEEADHGRETILLRVQAHLGLALAHFMLRDYSSSLTSSQA
ALSIAGDDLALKAQIMILLTQTLWALGTDEMKETAKAQLLEYIAVDSENIAAINALAGMG
ILTEDENLIDAALSEVLSLSVDQRQELDIHRDVDYLVVQHHLSKGMINDALSVAQKEVFL
EPGKVEPRIRLANLMIQSKEQRATLSLLSDAVSTSVRDDLSSVAAALRLHSVALCSPSAP
TLNLRKSLREIQRAIMLRPFHLKSWQALAYIRSCMGQ
NT seq
4254 nt
NT seq
+upstream
nt +downstream
nt
atgtcgttcgtaaagtcgaaactcaaagcagctcgcgaatccatcgggcacaaaaatttc
tccgctgcacgcgatgccgcgagacaggtattagagtatgagccagaaaactacaccgca
cacgtctttctcggattgtccttgctcaaccttggcgaaaccgacgaaagcgagcaggtt
tatcgcagagctgccagtctctcgccagatcagatcctagcctggcagggactatcgcaa
ttatatgaaaaaatagacaatccgcagcgacttctcgacactctgaaaactattgcacaa
ctccaccaaaaagctgacgatccaattaaaacagcggagactcttcaaaagatcatcgat
atcacgcgcagccttggtgataagaaacaggtccctttttatcatgtcttatctggcctg
gatcccccagatccaaccaatcctacggctacagccattttccacgttcaatctactgtt
cacaatgagcttccagtgctggaggagattgtagcactgatcgaagcccaggaaacttct
ttcatggaaaaggagtttgaaagtcggaggacacggctcaacgctggtagcctcaaagag
gtcaggaacgaaattggaagggaaatatgggcagaatctcagctccctgccctatacaat
cggatatcaaatcacccaggttcgaccgatgatcttcgcagaggaacggaatcaaagctg
cttcgatacaaagtgaactatttacacgctttacctctgactgagaaatatcaaatgcaa
aaacatgaactctcaaaagaaattgatgagctgattcgagggatcatcttattgaagata
ccggatgagttagcttggacattgtacgtggaagagcaggattgtgaggccatggctgat
tacgattattcggtgatgaagcaattgatcgaagtactcccaaactctgttttggctgag
gcattccaatgttattacgagtatatctcagagggattgtctgagcaaggaaacgagggc
gaggaagacgaagagaaggcttcgaagcacggagaagatcctttcgatggtatcatgaac
gtttttgcaagagctcaaggctcgttgacagtcagtcgtattgttggagaggtctatctc
aacgaagaagattaccaaaacgcaagcaacgttgcgaaaacggcccttgaactacttcag
aaggttgaacaagagagcggaaaaaaattgcgcaaaactcaagttggccttcagtccatc
cttgcatcggcgttgacaaatcttttccccccaaaacatcatcaacgtgcttcatgcatc
ttgcatgaagcgctgtctatctctcccgaaaatattagatgtcttatttctcaggcttac
attctacggactgcgcaagactggattcctgcagcccaattataccaaaagatagtagag
ttgcttcccggcgacctagaagatgggctcgaagcgaaagaggatcaagcgtggtgtcac
tggcaggccacacaagagttatcagacatagaaaagatgaaagatgttcttgacgacctg
aaaaacctggatgggcggagccataatgctgcacgatgtttgtggagaattgggaagtgt
tactgggaccttgatggaattcaaagagaagaagcgtattccttttttatagcttcgctc
aagcaagattcctcttttgcgccagcattcacctccctaggctttttttatgccgacgtt
gcttcaccttcggatcctgttcgagcatcaaaatgttttcaaaaagccttcgaattggat
cctcgcgagaatttagccgcccgaaaattagctgaaggtttcgcggaggacagagaatgg
gatctcgttgaagtagtggccaggcgtaccatcgaaggagagggtggcataagtcctgat
tccgcacccagcgtcgtcgagttcattccaacgaactcttgggcgtggaaagctgttggg
ctcgtggagatgaaccgtgaaaactatcttcctgctatccaggcgtttcagaacgttctg
agagccgaacctgaggattacctcagctggtccagactgggtgaggcttacgccaaggca
ggcaggcaggcagctgctatcaaagcactacatcacgcgctagagctcgatccacaaaac
tggctttgctcttttcttatcgcggagctcaagagcaagacaggtttatgtcaagaagcg
atctacatcttcgaggagctattaactcaacgtccggatgagctgagcgtaatcgtcgcc
cttgctcaagcgcactttgcactgggacagacgcagctccaaggaggctttcaaatcaga
gcggaagcttcatttttggatgctatagaggctgcgatgctgattctcgaacgctaccca
ggcttccgaggtgtgtcgtggaagataatatccgatgccgctcttcagctgtgtctccgt
acgaaatttcataatgattcacgcgtagctaaactttcaagtgcacttcaccttctttta
tcgaaagagcataaaaccgattcgcgatcaccatttgccatcgaatcatcaggtcctaat
gcattgctcagcatttcaattcaagcttgccatttgagggtcgctctaaaccaatcttct
aatgtagctcgtggggccgcatggtatgaccttgccattgggctaaagacctggtgcaca
agagtaccggacgtgggtctggatacaaagagcggagtaatagaagcaatgacaaatgcg
ctgaaggaggagccaacaaatgagctgtattggagtacttatgggaatgtgcagttttca
gaccacccaaaggttgcgcagcatgcttatatcaaggcactcgagctacatcccaaggat
gtagctacatggaccaacctgggtttgttgtattaccaccatggcgatctggagttggcc
aatgaagctctctatcgggcacaagtggtagatccagattaccctttagcgtggctcgga
caggccctggttgcagctggaaacggtcacgaattcgatgcatattccctcttgacacat
gccattactttgactcccaatcttcctgacattgatgctgaatacggaattcgagcgttc
tacgagtcgaagctctcgaagaggagaacagaggatgaagctgaccccataccttgcttc
ttcgctttggaccgttactgttcccgcagaccggatgatcctttggagttacacttgttt
gctctcatatgcgagaggattggtcacattgacttggccataagttcggtcgagcgatgc
ataagtattctcgaggcagcttacgaggaatcggagaattcagtcgtcgagagacaatat
acaatcgcgagcacgaccctcggccgtgtcttactatcggtgggtcaacacgagcgctca
ctggaatcttttcagacgtccctaggtttactggcggggaacgaggatggtgaagaagtg
actgaagaagcggatcatggccgggagaccatcctcctacgtgtgcaggctcatcttggg
cttgcgctagctcatttcatgttgcgagattattctagctcattgacctcatctcaagcc
gcattaagcatcgctggagatgacttggctttgaaagctcagatcatgattctcctgact
caaacactctgggctcttgggacagatgaaatgaaggagacggcaaaggcacaattactc
gaatacattgcagttgattctgagaatattgctgccataaatgcgcttgcaggcatgggc
attctgactgaagacgaaaatctcatcgatgcggcactatcggaagtgctcagtctatca
gttgatcagcgacaggaattggacattcatagagacgtggactacctggtcgtgcagcat
catctgagcaaggggatgatcaatgatgctttatcagttgctcagaaagaggtctttttg
gaaccgggaaaggttgaaccgcgcatacgtttagcaaatctgatgattcaaagcaaggag
cagagagcaacgctctcactgctttcagatgcagtctcaactagcgtccgagacgacctg
tcatcggtagctgctgccttgaggctgcactcggtcgcgttatgcagtccaagtgcacca
actctgaatttacgcaagagcctgcgagaaattcagagggcaataatgctgcggccattc
catttgaaatcttggcaggcattggcttatatcagatcctgtatggggcaatag
DBGET
integrated database retrieval system
