Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT64324
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Entry
AGABI1DRAFT64324 CDS
T03136
Symbol
AGABI1DRAFT_64324
Name
(RefSeq) hypothetical protein
KO
K12830
splicing factor 3B subunit 3
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abp03021
]
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
03041 Spliceosome [BR:
abp03041
]
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
03036 Chromosome and associated proteins [BR:
abp03036
]
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
Transcription machinery [BR:
abp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
Spliceosome [BR:
abp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
Complex B
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
Complex C
U2 SnRNP specific factors
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
Chromosome and associated proteins [BR:
abp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
TFTC complex
AGABI1DRAFT64324 (AGABI1DRAFT_64324)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_EML_2
Beta-prop_BBS7
Methyltransf_36
Motif
Other DBs
NCBI-GeneID:
18830490
NCBI-ProteinID:
XP_007333756
JGI:
Agabi_varbur_1_64324
UniProt:
K5XM10
LinkDB
All DBs
Position
Unknown
AA seq
1213 aa
AA seq
DB search
MHLYNLTLQPPTAALQAVVGNFSGARQQEIIVSHGTRLELLRPDPQTGKVVTVIATDVFG
SIRSLASFRLTGATKDYAILGSDSGRIIILEYDAKTSSFAKLHQETFGKSGARRIVPGQY
LATDPKGRSVMIAAMEKAKLVYILNRDAAANLTISSPLEAHKNSSIIHHIVGLDVGFENP
VYAALEVDYSESDQDPTGEAFKRAEKMLTYYELDLGLNHVVRKWSEPTDPRANLLVQVPG
GQLASSDRFDGPSGVLVCCEDHIIYRHMDSPQHRVPIPRRQHPLEDKERGVIITSAVMHK
MKGAFFFLLQSEDGDLFKVTIEHEDEEVKALKIKYFDTVPVASSLCILKSGFLFVASEFG
NHYLYQFQKLGDDDEEPEFSSTSFPSSGMAEPQAALPRVYFKPRPLDNLALADELESLDP
IIDSKVLNLLPNSDTPQIFAACGRGARSSLRTLQHGLEVEESVSSDLPGIPNAVWTTKRN
EDDPYDSYIILSFVNGTLVLSIGETIEEVQDTGFLSSAPTLAVQQIGSDALLQVHPHGIR
HVLADRRVNEWRVPSNKTIVAATTNKRQVVVALSSAELVYFELDLDGQLNEYQDRKAMGS
TVLALSIGDVPEGRQRTPYLAVGCEDQTVRIISLDPESTLETISLQALTAPPSAICIADM
LDASINKAQPTMFVNIGLQNGVLLRTVLDPINGQLTDTRTRFLGTRPIKLVRVLIHKHPA
ILALSSRSWLNYTYQNFMHFTPLIYENLDYAWSFSAELSPEGLIGISGSVLRIFHVPRLG
IKLKQDSIPLSYTPRKFITYPLNNLFYLIEGDHRVMGQDAVDKKLNELRQQNRAIDQEVL
NLSPEVFGRPKAANGTWASNIRIIDPVEGKTISVVPLDGNESAFSLAVVPFSAKGNELHL
VVGTAADTKLSPRTCSTGFLRVYKFLEDGRQLELVHKTEIDDVPLALMAFQGRLVAGVGK
ALRIYDIGKKKMLRKVENKQFGSAIVTLSTQGSRILVGDMQESIFFAVYKAPENRLLIFA
DDSQPRWISAATMVDYNTVVAADRFGNIFVNRLDPRVSDQVDEDPTGAGILHEKGLYMGA
PHKTKMICHFHVGDLITSIHKVSLVAGGREVLLYTGLHGTIGILVPFVTKEDVDFISTLE
QHMRTEQVSLVGRDHLGWRGYYVPVKAVVDGDLCEMYAKLPGSKQSAIAGELDRSIGEVL
KKLEQLRVTASGF
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgcacctctacaatcttactctgcagccgcccactgctgcgcttcaggccgttgtgggc
aatttttctggcgccaggcaacaagaaatcattgtttctcatggcacgcgcctcgaactc
ctgcggccagatcctcagacgggcaaggtcgtgaccgtgattgctacagacgtctttggt
tctattcggtcactcgcctccttcagactgacaggcgcaaccaaggactacgccatccta
ggatcggactcgggtcgtataatcatcctggaatatgacgccaagacaagtagcttcgca
aaattgcaccaggaaacgttcggaaagtctggtgctcgtcgaattgtacctggtcaatat
ctcgcaacggacccaaagggacgtagcgttatgatcgctgctatggaaaaagcaaaactc
gtctatattctaaatcgtgacgcggccgcaaacctaaccatctcgtccccactcgaggca
cacaaaaattcttctattatccatcacattgttggactggacgttggctttgaaaatcct
gtatatgcagcgctcgaagtggattattcagagtcagatcaagaccctacaggagaggct
tttaagagggcagaaaagatgcttacatattacgaacttgacctcggattgaaccacgtc
gttcgcaaatggagcgagcccacggatccacgcgcaaatctccttgtacaagttcctggt
ggacaacttgcatcgtcagaccgatttgacggaccttccggagtacttgtttgttgtgaa
gaccatattatttaccgacacatggacagccctcaacaccgtgttcctattccccggagg
cagcatccccttgaagacaaagagaggggggtgataatcacttccgctgtcatgcacaaa
atgaagggtgcattctttttcctccttcaaagcgaagacggtgatctgtttaaggtgacc
attgaacacgaagacgaagaagtcaaggcactgaagatcaagtactttgatactgtccca
gtcgcctcaagcctctgtatcttgaaatcaggattcttgtttgtcgcgtcagaattcggt
aatcactatctgtaccagttccagaagcttggagacgacgatgaagaaccagagttcagt
tcaacatctttcccttcatccggaatggccgaaccacaagctgctcttccacgcgtttac
ttcaaacctcgcccactagacaacttggctcttgctgacgaactcgaatcccttgatccc
atcatcgactccaaagtgcttaacctactccccaactccgataccccacaaatttttgct
gcatgcgggcgtggtgcgagaagtagcctcaggacactacaacacggcttggaagtcgag
gaatccgtcagctcggatctgcctggtatccctaatgcggtatggaccaccaaacgtaac
gaagacgatccatacgattcatacatcattctttcatttgttaacggcacactcgtcctc
tccattggcgaaactattgaagaagttcaagacacggggttcctttcctccgcacccacg
ttagcggtgcaacaaattggttctgatgcgcttcttcaagttcatcctcatggtatccgt
cacgtacttgctgatcgacgtgttaacgaatggcgcgtcccttcaaataaaacaatagtc
gctgccacgacaaacaaacgtcaagtagtcgttgccttgagctccgccgagctggtttac
tttgagttggatttggatggtcaactgaacgagtaccaggaccgaaaggccatgggctcc
accgtccttgcactctcgattggtgacgttcctgaagggaggcaaagaacgccatacctg
gctgtgggatgtgaagatcaaacagtcaggattatctcactggacccggagagtacgctc
gagacaatcagtttacaagcgttgacggcgcctccgtcggcaatttgcattgcggatatg
ttggatgcgagtatcaacaaggcccaaccgacgatgtttgtgaacattggactacagaac
ggagtgttgctgaggacagtattggatccaattaacggacaattgacggatacgcgcacc
aggtttttggggacaagaccaatcaagcttgtccgtgtactgattcacaaacatccagcc
attctggcactgtcatcgagatcatggctgaactacacataccaaaatttcatgcacttc
acgccgctaatttacgaaaatctggattacgcatggagtttttcggcggaattgagtcct
gaaggtttgattggtatttctgggtccgtgctcagaattttccatgtccctagacttggt
atcaaactgaaacaagattcgatcccattatcatatacgccgagaaagtttatcacgtat
cccctgaataatttattctatctgattgagggtgaccatcgcgtcatgggtcaagatgcc
gttgacaaaaaattgaacgaactgcgccaacaaaatagggcgatcgaccaggaagttctc
aatctgtcaccggaggtatttggtcgaccaaaggcagccaatggaacctgggcatctaat
attcgtattattgacccggtggaggggaaaacgatctctgttgtcccgttggacggtaac
gagtcagcattctctctcgctgtggtgccgttcagtgcgaagggtaatgaactacacctg
gttgtgggtactgctgcggatacgaaattgtctccaaggacatgttcaactgggttttta
agagtgtataagttccttgaggatggtagacagttggagctggtgcataagacggagatt
gatgatgtgccgcttgcattaatggctttccaaggaagactagtagcgggtgttgggaag
gcgctgaggatctacgatatcggaaagaaaaagatgttgaggaaggttgaaaataagcaa
tttggctccgcgattgtgacactgtcaacgcaaggttcacgtatcctcgtcggtgacatg
caagagtcaattttctttgccgtctacaaggcccccgaaaatcgtcttttgatttttgcc
gatgactctcagccgcgatggataagcgctgctactatggtggattataacactgtagtt
gctgctgaccggttcggaaatatctttgtcaatcgactagaccccagagtctccgatcag
gtggatgaagacccgacaggagccgggattttgcacgaaaaagggctttatatgggtgcc
ccccacaaaacgaaaatgatctgtcatttccatgttggggatctcatcacatccatacac
aaagtttctctcgttgccggtggccgtgaagtgttactatacacgggtctacacgggacg
ataggtatcttggtaccattcgtcaccaaggaagatgttgactttatttcgactttggaa
caacacatgcggacagaacaagtgagtttggtcgggagagatcatttaggctggagaggg
tattatgtcccagttaaggcggtcgtggatggagatttgtgcgagatgtatgcgaaatta
cctgggtcgaaacaaagcgcgatagctggcgagttggatagaagtattggagaagtcttg
aaaaagttggagcagttgagagttacggcaagtgggttttag
DBGET
integrated database retrieval system
