Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT80468
Help
Entry
AGABI1DRAFT80468 CDS
T03136
Symbol
AGABI1DRAFT_80468
Name
(RefSeq) hypothetical protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI1DRAFT80468 (AGABI1DRAFT_80468)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT80468 (AGABI1DRAFT_80468)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
AGABI1DRAFT80468 (AGABI1DRAFT_80468)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
OB_RNB
Motif
Other DBs
NCBI-GeneID:
18831669
NCBI-ProteinID:
XP_007334414
JGI:
Agabi_varbur_1_80468
UniProt:
K5WWH5
LinkDB
All DBs
Position
Unknown
AA seq
995 aa
AA seq
DB search
MDQITIKKRPRSEAVITQRKFFKKTARGKVIKVLRERYLRDDVSCGIRGCIACHSSLEHS
LPASGAPHPSFPNGHFVLPDTNIFLSQMDLMEATLFTPPIILLQTVMEEVRHRSLALYNR
LKALTKTDDKKIWVFYNEYRSETAVIREENETPNDRNDRGIRKTTEWYNSHLQVTRPPIR
GQAPPKIPAVVLLTEDVANRQKAESAGITAFSMKRYVESLPEANQLLDLLAVTDSNGIEP
TRASGVRQPLYPEYLLTATLAAGVKAGKLHQGYFNANQYNYLEGSVPVPAFNKPVLLIGR
ENMNRAVSGDIVVVEVFNEKEWKAPADEVVDQDTTLKNDNAEESGDEGEESDGEMAAREK
RLVKFEESARSAERQPTGRVVGIIKRNWRAYVCHIDSTSLTSLNATSLAQQTVFATPVSR
LLPRIRLRTRQAPMLIGQKILVTIDRWDINSRYPEGHFVRSLGKVESKEAEQESLMLEFD
VRYRPFGKAILDCLPPEGEQWVVPLKDDVNPEWKNREDLRQLLICSIDPPGCQDIDDALH
ARPLPNGNIEAGVHIADVSHFVHADTPIDNEAADRGTTVYLVDRRIDMLPSLLGTNLCSL
RPFVERLAFSAIWELTPEAEIVNVRFTKSVIASKAAFTYEEAQIRKDDPNQQDDLSHSIR
LLNTLAKKLKEKRMKAGALNLASPEVKIYLDSSESSDPIDVEQKELRETNSLVEEFMLLA
NISVAEKIQETFPQTAVLRRHLPPPKANFEKLQDILMKRRGIKLDVSSSRALADSLDTCV
DPQEPSFNTLVRIMATRCMLSAEYFCSGSVARDTFGHYGLASAIYTHFTSPIRRYADVLA
HRQLAAAIGNSPLHPSLHSKSHVEHVMDVINRRHRMAQMAGRASVEFYVGLALKGKNERE
AKGGGVKEEAFVIRTFRNGLSVFVSKLGIEGLVMFKKEIKFDAENYTITVPAPSGEVTIA
VFDKVSVNIQVEKDKNTQRGKVKMSLMSPIDSSDL
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
atggaccaaatcacgattaaaaaacgtcctcgctcagaggcggtgattacgcagcgcaag
tttttcaaaaagactgcgcgaggaaaggtcatcaaagtacttcgtgaacgctatcttcgt
gatgatgtttcgtgtggaatacggggctgcatcgcgtgccattcttccctggagcactcc
cttcctgcctctggagcacctcacccaagttttcctaatggccatttcgttctacccgac
acaaacatatttctctctcagatggaccttatggaagcaactctgtttacacctccgatt
atccttctacaaacggtcatggaagaagtccgacaccggtcactcgcactatacaacagg
ctgaaagctctaacaaaaacggacgataagaagatatgggtgttctataatgaatataga
tctgagactgccgttattcgcgaagagaatgaaaccccgaatgatcggaatgaccgaggg
atcagaaagaccactgagtggtacaacagccatctgcaggtcacccggccgccgattcgt
gggcaggctccaccaaaaattccagcggtcgttcttctgacggaagatgtggcaaacaga
cagaaagccgagagcgccggtataaccgcattctctatgaagagatacgtggaaagcttg
ccggaggccaaccaactcctcgatttactcgccgtgaccgattcgaatgggattgaacct
accagagcgtccggcgtccgacagcctttgtatcctgagtacctactcactgcgactctt
gctgcaggggtcaaagcagggaaactccaccaaggttacttcaatgcgaaccaatacaat
tatttagaaggcagtgtacctgtacctgcattcaacaagcctgttcttctcattgggcgg
gaaaacatgaatagggccgtcagtggagacattgttgtagttgaggttttcaacgaaaag
gaatggaaagctcctgcggacgaggttgtagaccaagatactactcttaagaatgataat
gcagaagaatccggagacgaaggggaagagtcggatggggagatggctgctcgagaaaag
cgcctcgtcaaatttgaagagtccgctcgatccgctgaaaggcaacccacaggtcgtgtc
gttggaatcatcaagcgtaactggcgcgcatatgtctgccatatcgatagtacatctctc
acatccctcaatgcgacttctcttgcccaacaaaccgtatttgcgaccccggtatcacgt
ctacttcctcgcattcggctaagaacgagacaagctccgatgttaatcggtcaaaagatc
ctagtcactatcgatcgctgggatatcaattcacgttatcctgaaggtcacttcgttagg
tccctcgggaaggtagagagcaaagaggcagagcaagagagcttgatgctggagtttgac
gtacgctatagaccgtttgggaaggcgatccttgattgtttgcctcccgaaggtgaacaa
tgggttgttcctctgaaagacgatgtgaatcccgaatggaaaaatagagaggacctaaga
cagctcttaatctgtagcatcgaccctcctggttgccaagatattgatgatgctttgcat
gctcgccctttacccaatggaaatattgaggctggcgttcatattgcggatgtttcgcat
tttgtccatgccgacacgcctatagacaatgaagccgctgatcgaggtaccactgtatat
cttgtggataggcgcatagacatgttgccttcactgctgggtaccaatttatgctctctt
cggccctttgtcgagcgtctagcattctcagctatctgggaattaactcccgaagctgaa
atcgtcaacgtcaggttcacaaaatctgtcattgcctcaaaagctgccttcacatacgaa
gaagctcagattcgcaaagacgacccaaatcaacaagacgatctcagccatagcattcgc
ctcctcaacaccctcgctaaaaagctgaaagaaaaacgtatgaaagccggtgcactcaat
ctcgcgtcacccgaagtcaagatctatctcgacagttcagaatcttcagatcctatcgac
gtcgaacaaaaagagttacgagagacaaacagtcttgttgaagaattcatgttacttgct
aatatcagcgtagccgagaagattcaagaaacgttcccgcagacggctgttctgagaagg
catttaccgcctccgaaggctaattttgagaaattgcaggatattttgatgaaaaggaga
ggtatcaaattggacgtatcgagttcgcgggcgttggccgattctctggatacatgtgtg
gatccgcaagagccttctttcaatacgcttgtgcgcattatggctacgcgatgcatgcta
tctgcggaatatttctgttcgggtagtgtcgcgagggatacatttgggcattacgggctt
gcgagcgccatctatactcatttcacaagtccaatccggcgatacgcagacgtcctcgct
catcgacaactagcagctgcaatcggaaattcaccccttcatccatcacttcactcgaaa
tcgcatgttgaacatgttatggatgttataaaccgacggcatcggatggcacaaatggct
ggccgagcgagcgttgagttctatgttgggttagcgttgaaaggaaagaatgaacgagaa
gcaaagggtggtggagtcaaagaagaggcgtttgtgatacgaacgtttagaaatgggttg
agcgtgtttgtgtcaaaattgggtattgaaggactcgtgatgttcaaaaaagaaatcaag
ttcgacgcggagaattatacgattactgtccccgctccttcaggagaagtcacgattgcg
gtattcgataaagtctcggttaacatccaagtcgagaaggataagaatactcaaagaggc
aaagtcaagatgtcattgatgtctcctattgattctagtgatctgtag
DBGET
integrated database retrieval system
