Agaricus bisporus var. burnettii JB137-S8: AGABI1DRAFT96933
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Entry
AGABI1DRAFT96933 CDS
T03136
Symbol
AGABI1DRAFT_96933
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
abp
Agaricus bisporus var. burnettii JB137-S8
Pathway
abp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AGABI1DRAFT96933 (AGABI1DRAFT_96933)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abp03019
]
AGABI1DRAFT96933 (AGABI1DRAFT_96933)
Enzymes [BR:
abp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AGABI1DRAFT96933 (AGABI1DRAFT_96933)
Messenger RNA biogenesis [BR:
abp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
AGABI1DRAFT96933 (AGABI1DRAFT_96933)
mRNA degradation factors
3'-5' decay
Ski complex
AGABI1DRAFT96933 (AGABI1DRAFT_96933)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
DEAD
Ski2_N
MTR4-like_stalk
MTR4_beta-barrel
ResIII
Helicase_C
DEXQc_Suv3
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
18832907
NCBI-ProteinID:
XP_007325723
JGI:
Agabi_varbur_1_96933
UniProt:
K5XKC4
LinkDB
All DBs
Position
Unknown
AA seq
1103 aa
AA seq
DB search
MNSAEQANLILHAVNPRKENAATFLNDLGLAGPPSQERINRDIESKLLLPPTEFPKQLLS
TYQTPNKRTTTGLTSTSLNRAPAPTQNFVRGKSGYVPFLPGGLDDIIIPGESTTGTKQLR
KVAPGLSRGLRLPGDEDDDILDLDFTEHTNEEKELENNTVHLKLVKTPQRTTRKADIQKR
DWAHVINVNQPLSNFHELVPAMAREYPFELDTFQKQAVYHLELGDSVFVAAHTSAGKTVV
AEYAIGLAEKHMTRAIYTSPIKALSNQKFRDFKQTFSSSSVGILTGDVQINPEATCLVMT
TEILRSMLYKGADLIRDVEFVIFDEVHYVNDAERGVVWEEVIIMLPDHVNIILLSATVPN
TKEFADWVGRTKKKDIYVISTLQRPVPLEHYLYAGRDKFKIVDAKRTFLSNGYSDARDAL
RRKQDKEREAAGLAPVQATRGRGASARGGGANSRGSTLATRGRGGRGGGPARTIHADKNV
YVHLLGHLKKENLLPVVIFTFSKKRCEENARTLMNADLCTSVEKSEVHVAIEKALSRLKG
SDKKLPQIARMRDLLSRGIGIHHGGLLPIMKEVVEILFARGLVKVLFATETFAMGVNMPA
KCVVFSNIRKHDGRNFRDILPGEYTQMAGRAGRRGLDTTGTVIILVGDSIPEQNTLHTML
LGTPGKLMSQFRLTYNMILNLLRVEALRVEEMIKRSFSENSSQRLLPMNQKKVIESEKKL
STLQRLACEQCIPDIGAYYDDIHEAVNLNQKLINMAVRHPQGSKLLSPGRVVILRDNHFH
PGNIGILLKAAPLQTLDSGRIDQNKTYFVLALVHPNVKSGDRGITALSTILQDWLANNEP
IPEVDWSKIRALDFQETQRQRDLVRERNIARACLRCPDFSSHYAIIHGEKILRANIAHLK
LAISDQNLELIPDYEQRIEVLKDLKFIDENCTVLLKGRVACEINSANELVLTELILENTL
ANYEPEEVVALLSCFVFQEKTEVEPSIPPRLQEGRDAILAISDSVSRVQDRNKVASEEFR
SELKFGLTEVVYEWAQGMPFEQITALTDVPEGTIVRCITRLDETCREVRDAARVIGDARL
FKKMEEAQLKIKRDIVFAASLYF
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtgcagagcaagccaatctcatcttgcatgctgtgaatccacgaaaagaaaat
gcagccactttcctgaatgatcttggtttagctggtccaccatcacaagagcgaatcaac
cgggatatagaatcaaagcttctcctccccccgactgagtttccgaagcagctactttct
acttatcaaactccaaataaacgaaccacgacggggctcacttcaacctcactcaaccgt
gctccagctcctactcagaattttgttcgcggaaagtctggatacgttcccttcttgcct
ggtggattagatgatattatcattcccggagaatcgacgacgggcaccaaacagctgcgg
aaggttgctcctggtctcagtagaggtctccgtttgcccggagatgaagacgatgacatt
ttggaccttgatttcaccgaacatactaatgaagaaaaggaattagaaaacaatacggtg
cacctcaagctggtcaaaacccctcaacgaacaactcgaaaagctgacatccaaaaacga
gattgggctcatgtaattaatgttaatcaaccgctttcaaactttcacgagctcgttcct
gcaatggcgcgtgagtatccttttgaactagacactttccaaaaacaggctgtctaccac
ctcgaactcggggattctgtgtttgtcgcggcgcacacttcggcaggaaagactgtggtt
gcagagtacgccataggtcttgcagagaagcatatgacccgagccatctatacttcaccc
attaaagcgctgtcaaatcagaaattcagggacttcaaacaaacattctcttcgtcttcg
gtgggaatcctcacaggtgatgttcagatcaacccagaggcaacttgcttggttatgaca
acagagattttgagaagtatgctttacaaaggtgcagacttgattcgcgacgtcgagttt
gtcatctttgatgaagtccattatgtcaatgacgccgagcggggtgtagtctgggaggag
gttattatcatgctcccagaccatgttaatattatcctcttgtccgccactgtgcccaac
acaaaagaattcgctgattgggtcggtcgtacgaagaaaaaagacatatacgtgatttcc
acacttcaacgacctgtaccgttggaacactatttatatgccggacgagacaagtttaag
atcgttgacgcaaagaggaccttcctttctaatggctattccgatgcccgagatgccctt
cggcgtaaacaggacaaggaacgcgaagctgctggtttagcgcctgtacaggccacgaga
ggccgtggtgcatcggctcggggtggtggtgccaactcccgagggtctacattggctact
cgaggcaggggaggccgagggggaggccctgcgcgcactatacacgcggataaaaatgtc
tacgttcatcttctggggcatttgaagaaagagaatcttcttccggtcgttattttcacg
ttctcgaagaagcgatgtgaagaaaatgccagaacgttaatgaatgccgatttgtgtacg
tcagtggagaaaagtgaggttcacgttgctatagagaaagcactatctcgactaaaaggt
tccgataagaaattgccgcaaattgctcgcatgcgagatcttctaagtcgtggcattggc
attcaccatggcggccttttaccaattatgaaagaggttgtggaaatcttatttgcacga
gggttagtcaaggtacttttcgctacggaaacgtttgccatgggagtaaatatgcctgca
aaatgtgtagttttctcaaatatacggaagcatgacggtcgcaatttccgggatatccta
cctggtgaatacactcagatggcaggacgagccgggcgacgcggcctagatacaactgga
acagtaattatcctcgtcggcgattctatacctgagcaaaacactctccacactatgtta
ttgggtacaccgggaaaattgatgtctcaattccggttgacctataacatgatcctgaat
ctgttacgagtcgaggctctacgggtggaagaaatgatcaagcggagtttctccgaaaac
agttcacaacggttattacccatgaatcagaagaaagtcatcgagagcgagaagaagctg
tcaacactgcagaggttggcgtgcgagcagtgcattcccgacatcggagcatattatgac
gatattcatgaagcggtcaatttgaaccaaaaattaatcaatatggctgttcgtcatcca
caaggctccaagctcttgtctcctggcagagtggtcatacttcgtgacaaccattttcat
ccgggcaacatcggcatcctccttaaagcggcaccactacagactttggattcggggcgt
atagaccaaaataaaacgtactttgtcttggcacttgtgcatcccaatgtcaaaagcggt
gatcgtggcatcactgctttatcaacaattttgcaggattggttggcaaataatgagcct
ataccagaagtagattggagcaagatacgtgcactcgattttcaggagactcagcgacaa
agagatctagtccgagaacggaatattgccagagcttgccttcgttgtcccgacttttct
tctcattatgccataattcatggagagaaaatcctgcgcgccaatattgctcatctcaaa
ttggccatctctgatcagaacctggagttgattccggattacgagcaacgcattgaagtt
ttaaaagacctcaagttcattgatgagaattgcactgtgcttctcaaaggacgggtggct
tgcgagatcaactcagcgaatgaactcgtgctgactgaactaatattggagaacacactg
gcaaactacgaaccggaagaggttgtcgccttgttatcgtgtttcgtgtttcaagaaaag
accgaggtggagccatcaattcctcctagacttcaagaaggcagagacgctatattagct
atcagtgacagcgttagtcgagttcaagaccgaaacaaagtcgcatcagaagagtttcgt
tcggagcttaagttcggccttactgaggtcgtttatgaatgggctcagggcatgcctttc
gagcaaataactgcgttaactgatgtgcccgaagggacaatagtacgttgcattactcgg
ttggacgaaacttgccgtgaagtgagggatgccgctcgtgtcattggagacgctcgtctt
ttcaagaaaatggaagaagcacagcttaaaatcaaacgtgacattgtctttgccgccagt
ttgtatttttag
DBGET
integrated database retrieval system
