Azospirillum brasilense Az39: ABAZ39_04200
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Entry
ABAZ39_04200 CDS
T03288
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
abq
Azospirillum brasilense Az39
Pathway
abq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
abq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
ABAZ39_04200
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abq03021
]
ABAZ39_04200
Transcription machinery [BR:
abq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
ABAZ39_04200
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
TACC_C
DUF2935
DUF730
Motif
Other DBs
NCBI-ProteinID:
AIB11230
UniProt:
A0A060DEV1
LinkDB
All DBs
Position
870412..872373
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AA seq
653 aa
AA seq
DB search
MATKAANSVEVSEARDEAGDGPLMDGMGLAVKKMIARGKERGYVTYDELNAALPQDTSSS
EQIEDTMAMLSEMGINIVESEEQDSEGNANADGEGEGRSAGNLDDDDIGRTDDPVRMYLR
EMGSVELLSREGEIAIAKRIEAGREMMIGAICESPLTIRAILEWHDALMEGKMLLRDIID
LDATYGGGPDGEEIPEGLAETVEAAPEETEEERPTRPEGESEEEGDEDGENSLSLSAMEA
ALKPQVIETFEKIKTTYDKLHKLHEGRIAAIQRGEDVAKQSDKKYDKLKTEMVELMNTVR
LNNQRIEQLVEQLYALNRKLTGFEGKLLRMATDCRVKREDFLNHYFGHELDPNWLERIRG
LNPKTWGKFYDKYEADIRKTRDGVSSISDEAKLPISEFRRIVSTVQKGEKEASRAKKEMV
EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT
RSIADQARTIRIPVHMIETINKLVRTSRQMLHEIGREPTPEELAERLMMPLEKVRKVLKI
AKEPISLETPIGDEEDSHLGDFIEDKNAVLPLDAAIQANLRETTTRVLASLTPREERVLR
MRFGIGMNTDHTLEEVGQQFNVTRERIRQIEAKALRKLKHPSRSRKLRSFLDT
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggccacgaaagctgcgaacagcgttgaagtttccgaagcccgggacgaggccggcgac
ggcccgctcatggacggcatgggtcttgccgtcaagaagatgatcgcccgcggcaaggag
cgtggctacgtcacctatgacgagctgaacgctgccctgccgcaggatacgtcgtcttcc
gagcagatcgaagacacgatggccatgctctccgagatgggcatcaacatcgtcgaatcg
gaagagcaggactcggaaggcaacgccaacgccgacggcgagggcgaaggccggtccgcc
ggcaatctggacgatgacgacatcggccgcaccgacgaccccgtgcgcatgtatctgcgc
gagatggggtcggtcgagctgctgtcccgcgagggcgaaatcgccatcgccaagcgcatc
gaggccggtcgcgagatgatgatcggggcgatctgcgaatcgccgctgaccatccgcgcc
atcctcgagtggcacgacgccctcatggaagggaaaatgctgctgcgcgacatcatcgac
ctggacgccacctatggcggcggcccggacggtgaggagatccccgaaggtctggccgag
acggtggaagccgccccggaggagaccgaggaggagcgtccgacgcgtcccgagggcgaa
agcgaggaggaaggcgacgaggatggcgagaacagcctgtccctgtcggccatggaagcc
gcgctgaagccgcaggtcatcgagaccttcgagaagatcaagaccacctacgacaagctg
cacaagctgcacgagggccgcatcgcggccatccagcgcggcgaggacgtggccaagcag
tcggacaagaaatacgacaagctcaagaccgagatggtcgagctgatgaacacggtgcgc
ctgaacaaccagcgcatcgagcagcttgtcgagcagctctacgccctgaaccgcaagctg
accggcttcgagggcaagctgctgcgcatggcgaccgactgccgcgtgaagcgcgaggac
ttcctgaaccactatttcgggcacgaactcgacccgaactggctggagcgcattcgcggc
ctgaaccccaagacctggggcaagttctacgacaaatacgaggccgacatccgcaagacg
cgcgacggcgtgtcgagcatctcggatgaggccaagctgccgatcagcgagttccgccgc
atcgtctccaccgtccagaagggcgagaaggaagcgagccgcgcgaagaaggagatggtc
gaggccaacctgcgcctcgtgatctccatcgcgaagaagtacacgaaccgcggcctgcag
ttcctggacctgatccaggagggcaacatcggcctgatgaaggcggtggacaagttcgag
taccggcgcggctacaagttctcgacctacgcgacgtggtggatccgtcaggcgatcacc
cgctcgatcgccgaccaggcgcggaccatccgcatcccggtccacatgatcgagacgatc
aacaagctggtccgcaccagccgccagatgctgcacgagatcggccgcgagccgaccccg
gaggagctggcggaacgcctgatgatgccgctggagaaggtccgcaaggtcctgaagatc
gccaaggagccgatctccctcgaaacgccgatcggcgacgaggaggattcgcatctcggc
gacttcatcgaggacaagaacgcggtcctgccgctcgacgccgccatccaggcgaacctg
cgcgagacgacgacccgcgtcctggcctcgctgaccccgcgcgaggagcgtgtgctgcgc
atgcgcttcggcatcggcatgaacaccgaccacacgctggaagaggtcggccagcagttc
aacgtgacgcgcgagcgcatccgccagatcgaggcgaaggcgctgcgcaagctgaagcac
ccgtcgcggtcgcgcaagctgcgcagcttcctggacacctga
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