Azospirillum brasilense Az39: ABAZ39_08310
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Entry
ABAZ39_08310 CDS
T03288
Name
(GenBank) RNA-metabolising metallo-beta-lactamase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
abq
Azospirillum brasilense Az39
Pathway
abq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABAZ39_08310
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abq03019
]
ABAZ39_08310
Messenger RNA biogenesis [BR:
abq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
ABAZ39_08310
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
Lactamase_B_2
RNase_J_C
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
DUF8020
GGDEF_2
Motif
Other DBs
NCBI-ProteinID:
AIB12004
UniProt:
A0A060DMF8
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Position
complement(1705730..1707448)
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AA seq
572 aa
AA seq
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MTHPDSAPSVHPVEGDGDLFAPEDDALYFLPLGGSGEIGMNLNLYGHRGKWLMVDLGISF
ADDTMPGLDVIMPDPAFIAERRHDLVGIVVTHAHEDHLGAIQYLWPQLRVPVYCTPFTAA
VLRAKLHERGLAGVVPVHEVALGSTIEVGPFSVEYVTVTHSIPEPNALAIRTTAGTVLHT
GDWKLDPEPLVGEAADEERLRAIGDEGVLALIGDSTNALVPGSSGSEGSVRKTLTELIGQ
FPDVRVAVSCFATNVARLESIAHAAAAHGRHVALVGRSMWRINEAARSNGYLADLPAFLT
EHDANYVPRDKLVLVCTGSQGEPRSALARIASDDHPQVSLQRGDVVVFSSREIPGNERAI
GRMQNLLVSQGIRIVTADEAPVHVSGHPAQDELVRMYQWVRPRIAMPVHGEQRHQLEHAK
LARACQVPEALVPGNGDLIRLSPDAPPRVVAQVRSGRMALDGKRLIPLDTGLMRARHRMV
HNGAAVVTLVMNGKGELVTAPQIAVMGLLDDSADRDMLLDVVDAVREAVAEMPKSARADD
EQVRAAARIAVRRCFNATHGKKPVTDVHLVRV
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgacccatcccgactccgctccctccgtccacccggtcgagggagacggcgacctgttc
gctcccgaggacgacgcgctctacttcctgccgctgggcggttcgggcgagatcggcatg
aacctcaacctctacggccatcgcggcaagtggttgatggtggatctcggcatctccttc
gcggacgatacgatgccggggctggacgtcatcatgccggaccccgccttcatcgcggag
cgtcggcacgacctcgtgggcatcgtggtcacgcacgcgcacgaggatcacctgggggcc
atccagtatctgtggccgcagcttcgcgtgcccgtctactgcacgcctttcaccgccgcc
gtcctgcgcgccaagctgcacgagcgcgggctggccggggtggtgccggtgcatgaggtg
gcgctgggcagcaccatcgaggtcggccccttctcggtcgagtatgtgacggtcacccat
tcgatccctgagccgaacgccctggcgatccgcaccaccgccggcacggtgctgcacacc
ggcgactggaagctcgaccctgaaccactggtgggggaggcggccgacgaggagcggctg
cgcgccatcggcgacgagggcgtgctggcgctgatcggcgacagcaccaacgctctggtg
cccggcagctccgggtcggaaggcagcgtgcgcaagacgctgaccgagctgatcgggcag
ttccccgacgtgcgcgtcgcggtgagctgcttcgccaccaacgtcgcgcggctggaaagc
atcgcccacgcggcggcggcgcacgggcgccacgtcgccctggtcgggcggtcgatgtgg
cggatcaacgaggccgcgcgctccaacggctacctcgccgacctgccggcctttctgacc
gagcatgacgccaactacgtgccgcgcgacaagctggtgctggtctgcaccggcagccag
ggggaaccgcgctccgcgctcgcccgcatcgcgtcggacgaccatccccaggtgtcgctg
cagcgcggcgatgtggtggttttttcctcgcgcgagattcccggcaacgagcgggccatc
ggccgcatgcagaacctgctggtcagtcagggcatccgcatcgtcaccgccgacgaggcg
ccggtccatgtgtccggccaccccgcgcaggacgagctggtccgcatgtaccagtgggtg
cgcccgcgcatcgccatgccggtccacggcgagcagcgccaccagctggagcacgccaag
ctggcccgcgcctgtcaggtgccggaggctctggtccccggcaacggcgacctgatccgg
ctgtcgcccgacgcgccgccgcgggtggtggcgcaggtccgctccggccgcatggcgctg
gacggcaagcggctgatcccgctcgacaccgggctgatgcgggcgcgccaccggatggtc
cacaacggcgccgccgtcgtcacgctggtgatgaacggcaagggcgagctggtgaccgcg
ccgcagatcgcggtgatggggctgctcgacgactcggcggaccgcgacatgctgctcgac
gtggtggacgcggtgcgcgaggccgtcgccgagatgccgaaatcggcccgcgccgacgac
gagcaggtgcgcgccgccgcccggatcgccgttcgccgctgcttcaacgcgacgcacggc
aagaagccggtgacggacgttcatctggtccgtgtataa
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