Acholeplasma brassicae: BN85305970
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Entry
BN85305970 CDS
T03095
Symbol
rnjA
Name
(GenBank) Ribonuclease J 1
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
abra
Acholeplasma brassicae
Pathway
abra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN85305970 (rnjA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abra03019
]
BN85305970 (rnjA)
Messenger RNA biogenesis [BR:
abra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BN85305970 (rnjA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
Lactamase_B_2
RMMBL
ODP
Motif
Other DBs
NCBI-ProteinID:
CCV65618
UniProt:
U4KRC0
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All DBs
Position
complement(674111..675817)
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AA seq
568 aa
AA seq
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MSRNTLLNAGEIGIFALGGLGEVGKNCYIFEIEDNIFVVDAGILFPDDSLLGFDYVIPDF
QYLVDNQERIAGLIITHGHEDHIGGIPYLLKQVNIPKIYASGIAVDLIEHKLLEHKGVKK
PRIVEYKAHHTYTFGSTELSFIRLNHSIPDMFGIVFKTKEGIIFHTGDFKIDYTPVGPAA
EYDKLAKIGAEGVLCLLSDSTNAEREGDTPSERTVGKAISEIFGKLTGRIIIATFASNVY
RMQQIVEASYQNGRKLAVFGRSMERAMEIGQQTGYIKAPKGVIVSAEEINKYPPEEITIL
CTGSQGEPMAALSRIANGTHRQIKAMPGDTVIFSSSPIPGNQEGVNRTIDQLYRRDVTVI
VNGPVADTHTSGHGARNDLRLMLSLTRPKFFIPIHGEHRMLKHHRDLAMQIGIDKNHIMI
MDNGDVTALNKNSIRNAGRVQAGDIYIDGTGIGDIGSAIIKERKLLSEDGLLSIILTLDP
VNKRLLTEPTVISRGFIYMKGNEVITSSIAAKAKEIVNLEFQRKQFTETQLKQSIIDKVS
DHVKEMTQRKPMIIPVVMSLTQKDSNQS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgagtagaaacacactactgaatgccggtgaaatcggtattttcgccctaggtggacta
ggtgaagtcggtaaaaactgttacatttttgaaattgaagataatatatttgtcgtcgat
gcggggattttatttcctgatgattcactactagggtttgactatgttattcctgatttt
caatatttggtcgataatcaagaacgcattgcgggcttaattatcacccatggtcatgaa
gaccacatcggaggtattccataccttctaaagcaagtgaatattccaaagatttatgcc
tcaggcatcgcagtagacttgatcgaacataaactcttagaacacaaaggtgtcaaaaag
ccacgtattgttgaatacaaagcgcatcacacctacacattcggttcaaccgaattatca
tttattcgcttaaatcactcaatccctgatatgtttgggattgtatttaagaccaaagaa
ggtatcatatttcataccggtgactttaaaattgactacacacccgttggccctgccgca
gagtacgataagttagctaaaattggcgctgagggtgtcttatgcttgctatcagattca
accaatgctgagcgtgaaggtgacacaccatctgaacgcaccgttggtaaagcaattagc
gaaattttcggtaaattaaccggacgtattattattgcgaccttcgcatcaaacgtgtac
cgtatgcaacaaattgttgaagcgtcatatcaaaatggcagaaaacttgccgtgtttgga
cgttcaatggaacgcgcaatggaaattggtcaacaaacaggttacatcaaagcacctaaa
ggtgtcattgtatcagccgaagaaatcaataaatacccacctgaagaaatcacgatttta
tgtactggttctcaaggtgaaccgatggctgctctttcaagaatcgctaatgggacacat
cgccaaatcaaagcgatgccaggtgataccgtcatcttctcatcttctccaatcccagga
aaccaagaaggtgtcaaccgaaccatcgatcaactttatcgtagagacgttacggtcatt
gtcaatggccctgttgccgacacccatacatctgggcatggtgcaagaaacgatctacgt
ttaatgttaagtttaacgagacctaaattctttattccaatccacggtgaacaccgtatg
ttaaagcatcatagagatcttgcgatgcaaattggcattgataaaaatcacattatgatt
atggacaatggcgacgttactgccttaaataagaattcgattcgaaatgccggacgtgtt
caagcaggcgacatttacatcgatggtactggtattggtgatatcggttctgccatcatt
aaagagcgtaaattactatctgaggatggcctactatcgattatcttaacactcgatcca
gtcaataaacgactattgactgaaccaaccgtcatctctaggggatttatctatatgaag
ggtaatgaagtaattacatcgagtattgcagcaaaagcaaaagaaattgtcaatcttgaa
ttccaaaggaaacaattcacagaaacacaacttaaacaaagcatcatcgacaaggtcagc
gaccacgtcaaagaaatgactcaaagaaaaccaatgatcattcctgttgtaatgagtcta
acacaaaaagattcaaatcaatcataa
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