Acholeplasma brassicae: BN85308730
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Entry
BN85308730 CDS
T03095
Symbol
srmB
Name
(GenBank) DEAD box ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abra
Acholeplasma brassicae
Pathway
abra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BN85308730 (srmB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abra03019
]
BN85308730 (srmB)
03009 Ribosome biogenesis [BR:
abra03009
]
BN85308730 (srmB)
Enzymes [BR:
abra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
BN85308730 (srmB)
Messenger RNA biogenesis [BR:
abra03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BN85308730 (srmB)
Ribosome biogenesis [BR:
abra03009
]
Prokaryotic type
rRNA helicases
BN85308730 (srmB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
Rep_fac_C
Motif
Other DBs
NCBI-ProteinID:
CCV65894
UniProt:
U4KT14
LinkDB
All DBs
Position
956184..957875
Genome browser
AA seq
563 aa
AA seq
DB search
MITFKELDLQEDILKALEKLGFEHPTDIQAQSIPVIKQGKDMIGQAQTGTGKTFSFAIPI
IEKIDISKPNVQALILCPTRELSLQVYSEVLKLIRFSKQIRVTVIYGGQSIDRQIKSLRE
RPQIIIGTPGRIIDHMNRKTLDFSNLETLVMDEADEMLKMGFQEDLETILKDTPETRQSV
LFSATVPPFIKNVASKYQKNPVHIKVEAKTLTVEKIKQVYYEVKKEYKDDLLIRLLDFYH
FRSIIIFANTKKAVDDLVSYLQNLGYNADGLHGDLKQIQRDRVMNSFRSNQVNILVATDV
AARGLDIDDVEAIFNYDIPQELEVYVHRIGRTGRAGRNGYAITFSNAWNRRRVRELENFT
KSPMELKEIPSIDDIHAVRVKGIYNQIVDMINQKRTNKYEMVIQKLLADGYDGIDIINAL
MTLNVDDQNKEYREIPAERRERRDYSDRSSSSFDRRDRGPRNSDRPSRGNGERRESREDR
PQRGGRNDKVLFTINIGQQEQIRPVNLIDLFRKEADLYATNVGDIKIAKQDSTFELSKQS
TNRILLLNGKTYKGKTIKVKRID
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
ttgattacattcaaagaattagatttacaagaggatattctaaaagccttagaaaaatta
ggtttcgaacatccaacagacatccaagcacagtccatccctgtgattaaacaaggaaaa
gacatgattggtcaagctcaaaccggcacaggtaagacattctcatttgccattcctatc
atcgaaaaaatcgacatcagtaaaccaaacgtacaagcattgatcttgtgccctacaaga
gagttatctcttcaagtttactctgaagtcttaaaattaataagattctctaaacaaatt
agagtaacggtgatttatggcggacagtctattgacagacaaattaagagtttaagagaa
cgtccacaaattatcatcggtacaccaggtcgtatcatcgatcacatgaatagaaaaaca
ctcgatttttctaacttagaaacgttagtaatggatgaagctgacgaaatgcttaagatg
ggtttccaagaagatttagaaaccatcttaaaagacacacctgaaacaagacaatctgtg
ttgttttcagcaaccgtgccaccatttattaagaatgtggcaagtaaataccaaaagaat
ccagttcacattaaggtagaagctaaaacattaacggttgaaaagattaaacaagtttat
tatgaagtgaaaaaagagtataaggatgatttactcattcgcttacttgatttttatcat
tttagatccatcattattttcgctaatactaaaaaagcggtcgatgaccttgtgtcttac
ttgcaaaatttaggttacaatgcggatggcttacatggggacttaaaacaaattcaaaga
gaccgtgtaatgaattcatttagaagtaaccaagtcaacattctagttgcaacagacgtt
gcggcaagaggacttgacattgacgacgttgaagcaatctttaactatgatattccgcaa
gaattggaagtttatgtacacagaatcggacgtacaggtcgtgcgggtcgtaatggttat
gcaattacgttctcaaatgcttggaacagaagacgtgtaagagaattagaaaacttcaca
aaatcaccaatggaattaaaagaaattccttcaattgatgatattcatgcggttcgtgtt
aaaggcatttacaatcaaattgttgacatgattaaccaaaaacgtacaaataagtatgag
atggtcattcaaaagcttttagccgacggttatgacgggattgatatcatcaatgcctta
atgacattaaacgttgatgatcaaaataaagaataccgtgagattccagctgaacgtcgt
gaacgtagagactatagtgatcgcagttcaagttcatttgatcgcagagatcgcggtcca
agaaatagtgatcgtccttcaagaggtaatggtgagcgtagagagtcacgtgaggatcgt
ccacaacgtggcggtagaaacgataaagtactatttacgatcaatattggtcaacaagaa
caaattagaccagttaatttaattgatttatttagaaaagaagcagacttatatgcaacg
aatgtcggcgacattaaaattgcaaaacaagattcgactttcgaactaagtaagcaatcc
acaaaccgtatcttactattaaatggtaaaacctacaaaggtaaaaccattaaagttaaa
cgtatcgactaa
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