Paracholeplasma brassicae: BN85311930
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Entry
BN85311930 CDS
T03095
Name
(GenBank) Helicase c2 domain-containing protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
abra
Paracholeplasma brassicae
Pathway
abra03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
abra00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
BN85311930
09124 Replication and repair
03420 Nucleotide excision repair
BN85311930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abra03021
]
BN85311930
03400 DNA repair and recombination proteins [BR:
abra03400
]
BN85311930
Enzymes [BR:
abra01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
BN85311930
Transcription machinery [BR:
abra03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
BN85311930
DNA repair and recombination proteins [BR:
abra03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
BN85311930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
DEAD
PDDEXK_1
ResIII
PhoH
Helicase_C
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
CCV66214
UniProt:
U4KT78
LinkDB
All DBs
Position
complement(1288126..1290477)
Genome browser
AA seq
783 aa
AA seq
DB search
MNKTYKVGVRDLVTFLYQSGDLSSENFQNVVALEGINAHQHIQGQYEIDDISEYPIEYMS
KIEGYEFTLSGRIDGVKKKLNDYRLEEIKSTKKNIFDDYFFYSNEHLAQLKLYSYMFMKN
NHLFDLNTELTYIQISDYKTRGFEFYFTLEELEPFYIESLTNYLQWLQILEAHQIKKEGS
IETLKFPFGEYRKGQREMMTYVYSSVKQKETLFAVAPTGIGKTMAALFSSIKALDNDKQK
IFYATAKNQGKDVAIEALQTLHQNGLETKMIEITSKDTICFLEKRDCDPKKCPFAKGFFD
RLTEAMQDIFMNETILTKEVIEEYARKHMVCPFEYSLYVSYFVDVIVCDYNYVFDPRVHL
IRYFDDETYQPIVLVDEAHNLISRSRDMYSAKLSKEDLIDLRKKGSKLKPSIRNQVNKVI
EYFDTLDEKLAEAHLLSNDLPDYTLSEKVTFLMKKIQSSLKENQDYPKKSEVMEGYLKLL
NYSVIMEYYNQAYKTNVMRQGDDLVVSLSCLDASEYLKQTINNKIQSAVFFSATLSPLDY
YKTLINQNEGYDLTIASPFDPSRLKVIVMDQINTRFQHREASLDVIVEVIKKVVAQKKGN
YIVFFPSYQYLNAVKKVLPKSLDALIIVQERDMNVQSRDETLLKFRADSPISQLGFFVMG
GVFSEGIDYVGNMLNGVIIVGVGMPMLNHENDQLKSYYDLTFQKGFDYAYTYPGMNKVIQ
AVGRVIRRDDDYGVAILIDDRFSKSVYRKLMPSHWTNQQVCKTPEALEMVLSDFWLEMEK
KKD
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgaataaaacatacaaagtcggtgttagagatttagtcacgttcttgtatcaaagtggg
gatttatcaagtgaaaacttccaaaatgtggttgcacttgaaggaataaatgcccatcag
cacattcaagggcagtacgaaatcgatgacatcagtgaatacccaattgaatatatgagt
aaaattgaagggtatgagtttacgctttcaggacgtatcgatggggtaaagaaaaaacta
aatgactatcgattagaagaaataaaatcaacaaagaagaacatctttgacgattatttt
ttctattcaaatgaacacttagctcaattaaaactatacagttacatgttcatgaagaac
aatcacctatttgatttaaacacagaactcacctacattcaaattagtgattataaaaca
agaggattcgaattctattttacacttgaagaattagaaccattttatatcgaatcgtta
acaaattatttacaatggctacaaattcttgaagcgcatcagataaagaaagaaggttca
attgaaaccttaaagtttccttttggtgagtatcgtaaaggtcaaagagagatgatgacc
tatgtctatagtagtgtcaaacaaaaagaaaccctatttgcagtcgctccaacggggatt
ggtaagacaatggccgcattattttcaagtattaaagcattggataatgacaagcaaaag
atcttttatgcaacggcaaaaaatcaaggtaaggacgtcgctattgaagcacttcaaacg
ctacaccaaaacggattagaaaccaaaatgatcgaaatcacatcaaaagacactatttgt
tttttagaaaaaagagattgtgatcccaaaaaatgcccgtttgcgaaagggttctttgat
cggttgactgaggcgatgcaagacatctttatgaatgaaaccatattaacaaaagaggtt
attgaagagtacgctagaaaacacatggtttgtccctttgaatattccttatacgtttct
tactttgtcgatgtgatcgtttgtgactataattatgtgtttgaccctagagttcatttg
attcgttactttgatgatgagacctatcaaccgattgtccttgttgatgaagcacataac
ctgattagccgatcaagagatatgtattcggctaaactatcgaaagaagatttgattgac
cttagaaaaaaaggcagtaaattaaaaccctccattcgaaatcaagtcaataaagtcatt
gagtattttgacacgcttgatgaaaaacttgcagaagcgcatctacttagtaatgattta
ccggattatacgctttctgaaaaagtgacctttttaatgaaaaagattcaaagttcatta
aaagaaaatcaagactatcctaaaaaatcagaagtgatggaaggttatttaaaactacta
aactattcggtgattatggagtattacaatcaagcatataaaaccaacgtgatgagacaa
ggtgatgacttggtcgttagtctttcttgtcttgatgcgagtgaatatttgaaacaaaca
attaataataagattcaatctgcggtgttttttagtgcaaccttaagtccactagattac
tataaaacgcttatcaatcaaaacgaaggctacgatttaacgattgcctccccatttgac
ccatcaagactaaaagtgattgtgatggaccaaatcaatacacgatttcaacacagagaa
gcaagtttagatgtaattgttgaagtcatcaaaaaagtagttgcgcaaaaaaagggaaac
tacattgtctttttccctagttatcagtatttaaatgcggtaaaaaaagtcttacctaag
agccttgatgcgctaataatcgtacaagaacgtgacatgaatgtgcaatcaagggatgaa
acgttgcttaaatttagggcggactcaccaatttctcaacttggattttttgtgatgggc
ggtgtgttctcagagggcattgattacgtgggtaatatgcttaatggggtaattattgtt
ggggttggaatgccaatgcttaaccacgaaaatgatcagttgaaaagttattatgacctg
acgtttcaaaaaggatttgactacgcctacacttatcctgggatgaataaagtcattcaa
gcggttggtcgtgtgatcagaagagatgacgattacggggttgcgatactaattgatgat
cgcttctcaaaatcggtttatcgcaagcttatgccttctcattggacaaaccaacaggtg
tgtaaaacaccagaagcgcttgaaatggtattaagtgatttttggctagaaatggagaaa
aaaaaggactaa
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