Anser brachyrhynchus (Pink-footed goose): 308181429
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Entry
308181429 CDS
T11989
Symbol
DDX42
Name
(RefSeq) ATP-dependent RNA helicase DDX42 isoform 1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
abrc
Anser brachyrhynchus (Pink-footed goose)
Pathway
abrc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
abrc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
308181429 (DDX42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
abrc03041
]
308181429 (DDX42)
Enzymes [BR:
abrc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
308181429 (DDX42)
Spliceosome [BR:
abrc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
308181429 (DDX42)
Complex B
308181429 (DDX42)
Complex C
U2 SnRNP specific factors
308181429 (DDX42)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
ERCC3_RAD25_C
DUF460
Motif
Other DBs
NCBI-GeneID:
308181429
NCBI-ProteinID:
XP_080420860
LinkDB
All DBs
Position
22:complement(4945211..4962050)
Genome browser
AA seq
942 aa
AA seq
DB search
MNWNKGGPGTKRGFGFGGFAITPGKKEEPKLSQQSHSAFGTAGSSAAFAKSGPPQLPSFY
KIGSKRANFDEENAYFEDEEEDNSNVDLPYIPAENSPTRQQFHSKSADSDSDDDPLEAFM
AEVEDQAARDMKRLEDKDKEKKNAKGIRDDIEEEDDQEAYFRYMAENPTAGVVQEEEEDN
LEYDSDGNPIAPSKKIIDPLPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLN
LRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTG
SGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAV
YGGGSMWEQAKALQEGAEIVVCTPGRLIDHVKKKATNLQRVTYLVFDEADRMFDMGFEYQ
VRSIASHVRPDRQTLLFSATFRKKIEKLARDILIDPIRVVQGDIGEANEDVTQIVEIFPS
GPSKWNWLTRRLVEFTSSGSVLLFVTKKANAEELANNLKQEDHNLGLLHGDMDQSERNKV
ISEFKKKGIPILVATDVAARGLDIPSIKTVINYDVARDIDTHTHRIGRTGRAGEKGVAYT
LLTPKDSNFAGDLVRNLEGANQHVSKELLDLAMQNPWFRKSRFKGGKGKKLNIGGGGLGY
RERPGLGSESSDRGNNNSVMSNYEAYKPSSGAMGDRLTAMKAAFQSQYKSHFVAASLNNQ
KTGSSAAGASGWTSAGSLNSVPTSSAQQNSANPDSPIAAAAAAKGVPGFTSTGNLSSVPT
FPSVGVQGYNNTTTASTNNREGVGSTSTGVAPGGGGGGGGIVRERYNDNRNSRHNEVPRR
GEGGGGRYNDVQRHGEGGGRHSDAYRHGEGRHSDNHRHGESRHFTDVSSGNRNNGESRNI
SEGRNNENRNGENRKDANSRDNKTDGFAVPEPPKRKKSRWDS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgaattggaataaaggtggacctggtacaaagagaggctttggttttggtggatttgcc
ataacccctggaaagaaagaggagcctaagctttctcaacagtctcatagtgcttttgga
acagccggttcttctgctgcatttgcgaaatcgggacctccacagctgccttctttctac
aaaattgggtcaaagcgagcaaattttgatgaagagaacgcgtactttgaggacgaagag
gaagataacagcaatgtcgacttgccatacattccagcggagaattcccccactcgccag
cagtttcattccaaatcggcagactctgacagcgacgatgatcctctggaggcattcatg
gctgaagtggaggatcaagctgctcgagacatgaagcgacttgaagataaagacaaggaa
aaaaagaatgctaagggtattcgagatgacattgaagaggaagatgaccaagaagcttat
tttcgctacatggctgaaaaccctactgctggtgtggtacaagaagaggaagaggataac
ctcgagtatgacagtgatgggaacccaattgcaccgtccaaaaaaatcattgatcccctt
ccacctattgaccattcagagattgaatatccaccttttgagaaaaatttctatgatgag
catgaggagatcaccagtctcaccccgcagcaagtggtggagttacgtcataaactaaat
ctccgggtctccggtgctgctcctccaagacctggcagtagctttgctcattttggattt
gatgagcaacttatgcatcagattaggaaatccgagtatacccagcccactcctatacag
tgccagggcgttccagttgcactaagtggcagagatatgattgggatagctaagactgga
agtggaaaaacagcagccttcatctggccgatgttgattcacatcatggatcaaaaggag
cttgaaccaggggacggtcccattgcagtgattgtatgcccaaccagagagctttgccaa
cagatccattctgaatgtaagcgctttggtaaggcgtataatctgcgctccgtagctgtg
tatggaggaggaagcatgtgggaacaagccaaagccctccaggagggggcagagatagtt
gtttgtacaccgggtcgtttgattgaccatgtgaaaaagaaagctacaaaccttcaaaga
gtcacttaccttgtgtttgatgaagcagacagaatgtttgatatgggttttgaatatcag
gtcagatcaattgcaagccacgtacgtcctgacagacagaccctcttgttcagtgccact
ttccgtaaaaagattgagaaattggcccgagatattctgattgacccaattcgagttgtg
cagggagacattggagaggcaaatgaagatgttactcaaattgtggagattttcccttct
ggccctagcaaatggaactggctgactcgacgccttgtggagttcacatcttctgggagc
gttcttctgttcgtcaccaagaaggcaaatgcagaagagctggctaataacctcaagcag
gaggatcataatctagggctgcttcatggtgacatggaccagagtgagaggaataaagtc
atttcagaatttaagaaaaaagggatcccgatactggtagctactgatgtagcagctcgt
gggttagatattccttccattaagactgtgatcaattacgatgtggctcgggacatagac
acgcacacccacagaattggtcgcactggcagagcaggcgagaagggagttgcctacact
ctgttgactcccaaagacagtaatttcgcgggtgatctggtccgaaatctggaaggtgct
aatcaacatgtttccaaagagctgctggatctagcaatgcagaacccatggttccggaaa
tcccgttttaaaggaggaaaaggcaagaagctgaacattggtggtggtggcttaggatat
cgtgagcgtcctggtctgggatcagaaagttctgaccgtggaaacaacaacagcgtgatg
agcaactatgaagcgtataagccatcctctggggcaatgggcgacagacttacagcaatg
aaagcagcttttcagtctcagtataagagccactttgttgctgcaagcttaaataaccaa
aagactggaagctctgctgcgggtgctagtggctggactagtgctgggagcttgaactca
gtaccaacaagttcagcgcagcaaaattctgcaaatcctgacagcccgattgcagctgcc
gcagcagcaaagggtgttccaggtttcaccagcaccgggaatctgagcagcgttcccacc
ttcccaagcgtcggagtacagggctacaacaacaccacgactgccagcactaataaccga
gaaggcgtcggcagcaccagcaccggcgtcgctcctggtggtggtggcggcggcggtggc
atcgtcagagaacgatacaacgacaacaggaacagtcggcacaatgaggtcccgcgccgg
ggagagggcggtggcggtcgctacaacgacgtgcagcgccacggggaaggaggtggccgc
cacagtgacgcttaccggcacggagagggccggcacagcgacaaccatcgccacggtgaa
agccggcatttcactgacgtgagcagtggcaatcgcaataatggtgagagcaggaatatc
agcgagggtaggaacaacgagaacaggaatggcgagaacaggaaggatgccaacagccgg
gacaacaagacagatggttttgctgtcccagagcccccaaaacgtaagaagagtcgatgg
gacagttaa
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