Anser brachyrhynchus (Pink-footed goose): 308183090
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Entry
308183090 CDS
T11989
Symbol
PCF11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
abrc Anser brachyrhynchus (Pink-footed goose)
Pathway
abrc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
abrc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
308183090 (PCF11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abrc03021
]
308183090 (PCF11)
03019 Messenger RNA biogenesis [BR:
abrc03019
]
308183090 (PCF11)
Transcription machinery [BR:
abrc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
308183090 (PCF11)
Messenger RNA biogenesis [BR:
abrc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
308183090 (PCF11)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PCF11_RFEG_rpt
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Motif
Other DBs
NCBI-GeneID:
308183090
NCBI-ProteinID:
XP_080424828
LinkDB
All DBs
Position
1:complement(204206010..204228148)
Genome browser
AA seq
1688 aa
AA seq
DB search
MSAPEGSAGSSEAREDACRDYQSSLEDLTFNSKPHINMLTILAEENVPFAKDIVSLIEAQ
IAKAPASEKLPVMYLMDSIVKNVGREYLTAFTKNLVATFICVFEKVDENTRKSLFKLRST
WDDIFPLKKLYALDVRVNSLDPAWPIKPLPPNVNTSSIHVNPKFLNKSPEESTAPTSAVT
SGASTPPAVPEIQKNLTQEQLIRQQLLAKQKQLLELQQKKLELELEQTKAQLAVSLSVQQ
GSSTIASVPAPSKPHVSQAPHMTVKPPHQTSVQSEKIKPSPSPPLHDVKIVNRDPRLNRM
AQHSSHAKDQSHRKEFPPNTTSQSDTKASKTSQAEKQNSTKQEKLKAGEKMQKKDLDQSE
AKSKSPSPLKNKLPNTKDTKNQESESTKVSEISKRDPRLKRHLQEKPEGDEVKEKRRNIE
KKEKEEHKTCEHRPVGSRNKVINGVVQKQDTPTEESEKQGGKQGRSSNRKRSRSRSPKSR
SPSTHSPKRRERRSPKRRLRSLSPTSSTPKIGKMRQIGPKQSHVEEATQAARDERNSNKR
NVKQEVRDPRRVKKAQEDRPQETASQHSAKASPDPKENAENWQGSKAGKRWKSGWEENKN
SQQSEEHQALGKSPHQRHRENWPAAKGILSPRAPKQQHRLSVDANLQIPKELTSASKREL
LKKANDRLASGEITQDEFLMVAHQIRQLFQYQEGKHRCNVWDSPTEEKCVLKKKPLLSDA
ELTYYEHKAKLKRTQVQHSLSRLDLLDPDDILDYHLPDALLSGIECEQAKAKRGVQFDRK
EPFGERSRRHSPVSGTKRPFPDNLSPLESRRRLEEQNATKGARGSKTFDPYDSWGESEEF
RDALRQQGKGTPEFQKIDGDAICRFDNREERQLLGQAGVREEPRSPFSERFKRARYEDPE
KAPFPESPGSRFGGIEAKQRISALMEDRPLFDGSPRQPAARVGVDGPGSPFVDGPAAGSN
SRIDGPPGQAALRFEGPLVGAGASQFDGPLAGAGGAGALRFEGPPGQLAGALRFEGPPGQ
VGGGGPLRFEGPLGPLRFEGPAGQPVGGPRFEGPGVGLRFDGPRGQPSGGLRFEGPHGQP
LGPRGQPGGGLRFEGPHGQPLGPHGQPGGGLRFEGPHLQPLGPHGQPGGGLRFEGPHGQP
MGPHGPSGGGLRFEGPHGPPGVGPRLIDGPVHQGAGGLRFDGPLGRTGPRFDGCHAGFDG
QPGQLSLLQRFDGIHGQPGPRFERAPGQQGQPRFDTAIPQRFDGPHQPASRFDLPLGLQG
ARFENVANHPASRLEMSPYGQGGPFVDHPSQGYNGPSHGMQFQRPDIFDGSPGPNFNGPA
GPGAQNFSLRASGHYFDEKNLQGPQYGNFNSMAVGSNQVSLMSAQPGPYGQGQQYLPNPG
SFVQNPAGGLPHSYPDNHLGQLDVNELFAKLLSTGILKLSKTDSTSAQVNETSAQPAAEE
EEDDQSDQDVPDLTNFTVEELRQRYDSVINRLYTGIQCYSCGMRFTTSQTDVYADHLDWH
YRQNRTEKDVSRKITHRRWYYSLTDWIEFEEIADLEERAKSQFFEKAHEEVVLKTQEAAK
EKEFQSVPAGPAGAVESCEICQEQFEQYWDEEEEEWHLKNAIRVDEKIYHPSCYEDYQNT
SSFDCTPSPSKTPVENPLNIMLNIVKQETQESCDSPKVKEEPDDTPTACAEESTPASTDI
KTEPDESI
NT seq
5067 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccccggagggcagcgctggtagcagcgaggcccgggaggacgcgtgtcgcgat
taccagtcgtcgctggaagacctgacgttcaacagcaagccgcacatcaacatgctgacc
atcctggctgaggagaacgtgcccttcgccaaggacatcgtctccctgatcgaggcgcaa
atcgccaaggctcctgcatcagagaagctccctgttatgtaccttatggattccattgtc
aagaatgtgggaagagagtatcttactgcatttactaaaaacctagttgcaacatttatt
tgtgtatttgaaaaggtggatgaaaatactaggaaaagtttatttaaattacgctccaca
tgggatgatatttttcctttgaagaaactatatgcccttgatgtcagagtcaactcatta
gatcctgcttggccaattaaacctctgcccccaaatgtgaatacttctagcatccatgtg
aatcctaagtttttaaataaatcgccagaggaatctactgcacctacctctgctgtcact
tctggtgcctctactcctccagctgttcctgaaatacaaaagaatttgacacaggagcaa
ctgataaggcagcaattgcttgcaaagcaaaaacagttgttagaacttcagcaaaaaaaa
ttagagctggagctggaacagactaaagcacagctggctgtttctcttagtgttcagcaa
ggatcatctactatagcttcagttccagcaccttccaagccacatgtgtctcaggcacct
catatgacagttaaaccacctcatcagacttctgtgcaatctgaaaaaatcaaaccatcc
ccaagtcctccacttcatgatgtcaaaatagtaaatagggatcctcgacttaataggatg
gctcaacattcttctcatgctaaagatcaatctcataggaaagaatttccaccaaacaca
accagtcagtctgataccaaggcaagcaaaacatcacaggctgaaaaacaaaactccaca
aagcaagagaaattgaaagcaggtgaaaaaatgcagaagaaagatcttgatcagtcagaa
gcaaaatctaaatcaccatctcctttgaaaaacaagttacccaatactaaagatactaaa
aaccaggaaagtgaaagcacaaaagtatctgaaatcagtaaacgggatccaagactgaaa
agacatcttcaagaaaagccagagggcgatgaggtgaaagagaagaggagaaatatagag
aaaaaagaaaaagaggaacataagacgtgtgaacatagaccagtaggcagcagaaataaa
gtaattaatggtgttgttcaaaaacaagacacacctacagaagaatcagaaaaacagggt
ggaaaacaagggagatcaagtaacagaaaacggtcacgatcacgctctcctaagtcacgg
tcaccatctacacattctccaaaaagaagagagaggagatcacccaaaagaagactcaga
agcttatctcccacttcgtcaactcctaaaattggaaagatgcgtcagataggtcctaag
cagtctcacgttgaagaagccacacaggcagcaagagatgaaaggaattctaataagcgg
aatgtgaaacaagaggtgcgagatccacggagagtgaaaaaagcccaagaagacaggcct
caagaaacagcaagtcagcattctgcaaaagcttctcccgatccaaaggagaatgcagaa
aactggcagggatccaaagcaggcaagaggtggaaatctggttgggaagaaaataaaaac
tcgcagcagagtgaagaacaccaagcacttggtaaatctcctcaccaaagacaccgggaa
aactggcctgctgctaaaggaattttatcaccccgagcaccaaagcagcagcacaggtta
agtgtggatgccaatttacaaattcccaaagaattgacatctgcaagcaagagagaatta
cttaaaaaggccaatgatcgcttagcatctggtgaaataactcaagatgaattcctcatg
gtagctcatcagattcgacagctgttccagtaccaggaagggaagcacagatgtaatgtg
tgggatagccctacagaggagaaatgtgttttgaaaaagaaacctcttctatctgatgca
gaattaacatactacgaacacaaagctaaattaaaaagaacccaagtccagcattcatta
tcaaggcttgatctgttggatcccgacgatattttggattatcatctacccgatgcgttg
ctttctggaatagaatgtgagcaagcaaaagcgaagcgtggagtacagtttgacagaaaa
gagccatttggagaaagatctaggaggcattctcctgtaagtggcactaagagacctttt
cctgataacctttcaccgcttgagagtcgacggagactggaggaacaaaatgctaccaaa
ggagcaagaggttctaaaaccttcgatccttatgacagctggggagaatcagaggaattt
agagatgctctcaggcaacagggaaaaggcacaccggagttccagaaaatagatggtgat
gcaatctgcagatttgataatcgtgaagaaagacagcttctcgggcaagctggtgttcga
gaggaaccaagatcaccattcagtgagcgtttcaaaagagctaggtatgaggatccggag
aaagcaccatttccagaaagtccaggatcgagatttggaggcattgaagccaagcagaga
ataagtgcactaatggaagacagacctctatttgatggctcacctagacaacctgctgca
agggttggagtagatggaccaggaagtccttttgttgatggtcctgctgctggttcaaat
tctcgaatcgatgggccacctggacaggctgctctgagatttgaggggccgttggtcgga
gcgggtgcatcacagttcgatggaccactggcgggggcagggggagcgggagccctaaga
tttgaagggccgccagggcagctggcaggggctctcagatttgaaggacccccaggacag
gttggaggaggaggtccactgaggtttgagggacctcttgggcctttgcgctttgagggg
cctgcaggccagcctgtaggtggtcctagatttgaaggacctggagttggtctcaggttt
gacggaccccgtggtcagccttcaggtggtctcaggtttgaggggcctcatggtcaacct
ctggggcctcgaggtcaacctgggggtggtctcaggtttgagggaccccacggtcagccc
ttggggcctcatggtcaaccagggggtggtctcaggtttgaggggccacatttacagcca
ttggggccccatggtcaacctggaggtggcctcagatttgaggggccacatgggcagcct
atggggccacatggaccatcagggggcgggctcagatttgaggggccacatggaccacca
ggtgtaggtcctaggttgattgacggaccagtacaccagggagctggtggacttagattt
gatggtcctctgggacggacgggtccaagattcgatggctgtcatgctggattcgatggt
cagcctggacagctatctcttttgcaaagatttgatggaattcacggacagcctggccca
agatttgaaagggcacctggccagcagggacagccacgatttgatacagccatacctcaa
agatttgatggtcctcaccagccagcctcaaggtttgacctgccccttggccttcaaggt
gcaaggttcgaaaatgtagctaaccatcctgcctcaagattagaaatgtcgccatacgga
caaggtggtccgtttgttgatcatcccagccagggctacaatggaccatctcatgggatg
caattccagaggcctgacatatttgatggctcgccaggaccaaatttcaatgggccagct
ggcccaggagcacagaatttttcattgagagcatctggacattattttgatgaaaaaaat
cttcagggtcctcaatatggaaacttcaatagtatggcagtgggaagtaatcaggtttcg
ctcatgtctgctcagccaggaccttatggacaaggtcaacagtatttgccaaatcctgga
agctttgttcagaaccctgcaggaggccttccacattcatatcctgataaccaccttggc
cagcttgatgtcaatgaattgtttgctaagctgttgtcaacaggaattctcaaactgtca
aaaacggattccacttcagcacaagtgaacgaaacatcagcccagccagctgctgaagag
gaggaggatgaccagagtgatcaagatgtcccagacctcacgaactttacagttgaagaa
ctcagacagcgttatgatagtgttattaatcgactatacactggaattcagtgttactcg
tgtggaatgagatttactacttcacagacagatgtttatgccgatcatttagattggcat
tatcgccagaaccgcacagaaaaagacgttagcagaaaaattacgcacagaaggtggtac
tacagtttaacggattggatcgaatttgaagaaatagctgatctagaggaacgtgcaaaa
agccaattttttgaaaaagcccatgaagaagttgtgctcaagacacaagaagctgcaaaa
gagaaagagtttcagagtgtccctgctggaccagctggagcagttgaaagctgtgaaatt
tgccaagagcaatttgaacaatattgggacgaggaagaggaagagtggcacctaaagaat
gccatacgagtagatgaaaagatttaccatccatcttgttatgaagactaccaaaacaca
tcatcatttgattgcacaccatctcccagcaagactcctgtagaaaatcctctaaatatt
atgttgaacattgttaaacaagaaacacaagagtcctgtgactcgcctaaagtcaaagaa
gaacctgatgacacccctactgcctgtgcagaagagagcacacctgcatctacagatatt
aaaacagaacctgatgagtctatttaa
DBGET
integrated database retrieval system
