KEGG   Anser brachyrhynchus (Pink-footed goose): 308183964
Entry
308183964         CDS       T11989                                 
Symbol
COL2A1
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
abrc  Anser brachyrhynchus (Pink-footed goose)
Pathway
abrc04510  Focal adhesion
abrc04512  ECM-receptor interaction
abrc04518  Integrin signaling
Brite
KEGG Orthology (KO) [BR:abrc00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    308183964 (COL2A1)
   04518 Integrin signaling
    308183964 (COL2A1)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    308183964 (COL2A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:abrc00536]
    308183964 (COL2A1)
Glycosaminoglycan binding proteins [BR:abrc00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   308183964 (COL2A1)
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 308183964
NCBI-ProteinID: XP_080426702
LinkDB
Position
29:complement(1955978..>1970964)
AA seq 1377 aa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NT seq 4134 nt   +upstreamnt  +downstreamnt
atgggtcgtaggacaccccgagggcctccgggaccgcagggccccgcaggcgagcaggga
cagcgaggggaccgcggcgagaaaggggagaagggtgctcccggcccccgcggcagggat
gggagaacccggaaccccccggcaaccccggccccccccggcccccccccggacctcccg
gccccccccggcctcggtgggaacttcgcggctcagatggcgggcggcttcgacgagaag
gctggcggcgcgcagatgggcgtcatgcagggccccatgggacccatgggacctcgcggc
ccccccggccccaccggcgctcccggtccccaaggatttcaaggcaaccccggcgagcct
ggcgaacccggcgctgctggtccgatgggtccccggggacctccgggaccgcctgggaaa
cccggtgacgacggcgagacaggcaaacccggcaaatcggcgaacgtggccccccccggc
ccccagggtgctcgcggcttccccggaccccccggtctccccggagtgaaaggccaccgg
ggctaccccggcttggacggtgccaaaggcgaggcaggagctcccggagccaagggtgaa
tccggctcccccggcgagaacggctcccccggccccatgggtccccgcgggctgccagga
gagcgaggacgtcccggcccctccggcgctgcgggtgctcgcggcaacgacggtctcccc
ggccccgccggaccccccggacccgttggcccagccggagcccccggcttccccggcgcc
cccggctcaaagggtgaagcaggccccaccggcgcacgaggtcccgagggtgcccaaggt
ccccgcggcgaatccggcacccccggctcccccggccccgccggcgcccccggtaaccca
ggcaccgacggcatccccggcgccaagggctcggcgggtgccccgggcatcgcgggcgct
ccaggcttccccggcccccgcggcccccccggaccccaaggtgccaccggcccgctggga
cccaagggacagacgggagaacccggcatcgcgggcttcaaaggcgagcaaggaccgaag
ggcgagacgggccccgcaggaccccaaggtgcccccgggccggccggtgaggaaggcaag
agaggagcccgtggggaacctggtgctgccggccccgtgggcccccccggagagaggggt
gctcctggcaatcgcggcttccccgggcaagacgggctggctggacccaagggtgctccg
ggtgaacgcggccccgctggcctcgctggtcccaagggtgccaccggtgaccccgggcgt
cccggagagcctgggctgcctggagcaaggggtctcaccggccgcccaggcgatgctgga
cctcaaggcaaagtcggcccgaccggcgctcccggcgaggacggccgccccggccccccc
ggcccgcagggtgctcgcgggcagcccggcgtgatgggtttccccggtcccaaaggcgct
aatggcgagcctggaaaagccggcgagaaaggactgcccggtgccccggggctgcggggt
cttcctggcaaggacggtgagacaggagctgccggcccccccggacctgccggtcccgct
ggcgagagaggagagcaaggagcccccggtccctccggcttccaggggctgcccgggcca
ccaggtccccccggagagagcggcaaacccggagaccagggcgttcctggagaagccggt
gcccccggtctcgtcggtcccagaggcgaacgcggcttccccggtgagcgtggctccccc
ggcgcacaagggctgcaaggtccccgcgggctccccggcacgccaggcaccgacggaccc
aagggtgcaaccggcccggccggccccaacggcgcccagggtcccccagggctgcaggga
atgcccggcgagagaggagcagctggcatcgccggccccaagggtgaccggggagatgtc
ggcgagaagggtcccgagggagctccaggaaaggacggcgcacgcggtctgacgggtccc
atcggtccccccggccccgctggccccaacggcgagaagggtgaatccggcccccccggt
ccatctggcgctgccggtgcccgcggtgcccccggcgagcgtggcgagcccggtgccccc
ggtcctgctggatttgccggccccccgggcgccgacggacaacccggtgccaaaggcgag
caaggagagcccgggcagaagggtgacgccggcgctcccggtccccaaggtccctcgggc
gcacccggcccccagggtcccactggtgtaactggtcccaaaggagcccgcggcgctcag
ggtccccccggagccacaggattccccggagccgccggccgcgtgggaccacccggccct
aatggtaacccaggcccccccggccctcctggctctgctggcaaagacggtcccaagggt
gctcgtggcgatgccggtcccccgggccgtgccggcgaccccgggctccaaggccctgct
ggcccccctggcgagaaaggcgaacccggagaggatggccctgcgggtcccgacggcccc
cccggtccccaaggcttggcaggacagcgcggcatcgtcggtcttcccggacagcgtggc
gagagaggcttccccgggctgccagggccatcgggcgaacctgggaagcaaggagcaccc
ggctctgcgggcgaccgaggcccccccggccccgtgggtccccccggcctgacaggacct
gctggcgagcctgggcgcgagggcaaccccggtgctgacggacccccaggcagagacggc
gcagccggcgtgaagggcgatcgcggcgagaccggccccgtgggtgcccccggcgctccc
ggtgcccccggcgctcccggccccgttggtcccaccggcaaacaaggagacagaggcgag
acgggtgcacaagggcccatgggtccctccggtcctgctggcgctcgaggcatgccgggt
ccccaagggcctcgcggtgacaagggtgagactggagaggctggagagagagggctgaag
ggccaccgcggcttcaccggactgcagggtctgcccggaccccccggtccttctggagac
caaggcgctgctggtcctgctggtccctccggtcccagaggtccccccggccccgtcggc
ccctccggcaaagacggctccaacggcatgcccggccccatcggcccccccggcccccgc
ggacggagcggcgaacctggtcctgcgggtcctcctggaaacccagggccccccggcccc
cccggccctccaggcaccggtatcgacatgtcagctttcgccggcctgggtcagacggag
aagggccccgaccccatccgctacatgcgggcggacgaggccgccggtggcctgcggcag
cacgacgtcgaggtggacgccaccctcaagtccctcaacaaccagatcgagagcatccgc
agccccgagggctccaagaagaacccggccaggacctgccgcgacatcaagctctgccac
cccgactggaagagcggagactactggatcgacccgaaccagggctgcaccctggacgcc
atcaaggttttctgcaacatggagacgggcgagacctgcgtctacccgacccccagcagc
atccccaggaagaactggtggaccagcaagaccaaagacaagaagcacgtctggttcgcg
gagaccatcaacggcggcttccacttcagctacggcgatgagagcctgtctcccaacacc
gccagcatccagctgaccttcctccgcctgctgtccaccgagggctcccagaacgtcacc
taccactgcaagaacagcatcgcctacatggacgaggagacgggcaacctgaagaaagcc
ctcctcatccagggctccaacgacgtggagatcagagccgagggcaacagcaggttcacc
tacagcgtcctggaggacggctgcacgaaacacactggcaaatggggcaagacagtcatc
gagtaccggtcgcagaagacctcgcgcctgcccattgtagatattgcacctatggacatt
ggtggcgccgagcaggagtttggcgtggatatcggccccgtctgcttcttgtaa

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