Aromatoleum bremense: pbN1_01610
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Entry
pbN1_01610 CDS
T07149
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
abre
Aromatoleum bremense
Pathway
abre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
pbN1_01610 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abre03019
]
pbN1_01610 (deaD)
03009 Ribosome biogenesis [BR:
abre03009
]
pbN1_01610 (deaD)
Enzymes [BR:
abre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
pbN1_01610 (deaD)
Messenger RNA biogenesis [BR:
abre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
pbN1_01610 (deaD)
Ribosome biogenesis [BR:
abre03009
]
Prokaryotic type
rRNA helicases
pbN1_01610 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_22
BD-FAE
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTQ30153
LinkDB
All DBs
Position
178773..180635
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AA seq
620 aa
AA seq
DB search
MTSPIESFAQLDLRAPLLDALSEIGYETPSPIQAVCIPHLLAGHDLLGEAQTGTGKTAAF
ALPLLDRLDLSIKNPQVLVLAPTRELAIQVAEAFQRYAKNLPGFHVLPVYGGQSMVVQLR
QLARGAHVIVGTPGRVMDHIERKSLNLDSLTTLVLDEADEMLRMGFIDDVEWILQHTPAE
RQTALFSATMPDAIRRVAHRYLRDPREVKIKTSTTTVAAIRQRYCQISVAHKLDALTRIL
EVEEDFDAAIIFVRTKTATVELADKLEARGYSAAALNGDMTQQLRERVIEQLKGGQLDIV
VATDVAARGLDVSRISHVINYDIPYDTEAYVHRIGRTGRAGRTGSAILFVAPREIRMLKV
IERATRQPIEALQLPSREAVADKRVAAFRQQVATVLESEDLAFFRDVVAGMESTHEAELH
DIAAALAFLAQRERPLQLPESKGPDIARLAEPQREPGAERAPRENREKILERRREFSEGN
LQRYRIEVGRNQQATPKDIVGAIANEAGIESRYIGQINLYEDYSTVELPSGLPHDVLDIL
RRVRVRQHQLNIRPLDAEEAKRDAARVRPGAPRPGAAPRHAAHPGGKPARPGSPGPRSFS
GEKRTPSTGFKPGKKKPHDR
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgacttcccccatcgaaagcttcgcccaactcgatctccgtgcaccgctgctcgatgcg
ctgtccgaaatcggctatgaaacgccgtcgccgatccaggcggtctgcatcccgcatctg
ctcgccgggcacgacctgctcggcgaggcgcagaccggcaccggcaagaccgccgcgttc
gcgctgccgctgctcgaccggctcgacctcagcatcaagaatccgcaggtgctcgtgctc
gcgccgacccgcgaactcgcgatccaggttgccgaggctttccagcgttatgcgaagaac
ctgcccggtttccacgtactgccggtgtacggcggccagagcatggtcgtccaactgcgc
cagctcgcccgcggcgcacacgtcatcgtcggcacaccgggccgcgtcatggaccatatc
gagcgcaagagcctcaatctcgacagcctgacgacgctggtgctcgacgaagccgacgag
atgctgcgcatggggttcatcgacgacgtcgaatggatcctgcagcacacgccggccgag
cgtcagaccgcgctgttctcggcgacgatgcccgatgcgatccgccgcgtcgcgcaccgc
tacctgcgcgacccgcgcgaggtcaagatcaagaccagcacgaccacggtcgcggcaatc
cgccagcgctactgccagatcagcgtcgcgcacaagctcgacgcgctgacgcgcatcctc
gaagtcgaggaggatttcgacgccgcgatcatcttcgtccgcaccaagaccgcgaccgtc
gagcttgccgacaagctcgaggcgcgcggctactcggccgccgcgctgaacggcgacatg
acgcagcagctgcgcgaacgcgtcatcgaacagctcaagggcgggcaactcgacatcgtc
gtcgccaccgacgtcgccgcacgcggcctcgacgtctcgcgcatcagtcacgtcatcaac
tacgacatcccgtacgacaccgaagcgtatgtgcatcgcatcgggcgcaccgggcgcgcg
ggccgcaccggcagcgcgatcctgttcgtcgcgccgcgcgagatacggatgctgaaagtc
atcgagcgcgcgacccgccagccgatcgaggcgctgcaactaccgtcgcgcgaagccgtc
gccgacaagcgagtcgccgcgttccgccagcaagtcgccacagtgctcgaatccgaagac
ctcgcgttcttccgcgacgtcgtcgccggcatggaatccacccacgaagccgaactccac
gacatcgccgccgccctcgccttcctcgcgcagcgcgagcgcccgctgcaactgccggag
tcgaaaggccctgacatcgcgcgcctggccgaaccgcagcgtgaaccgggcgccgagcga
gccccgcgcgaaaaccgcgagaaaatactcgaacgccgacgcgagttctccgagggcaat
ctgcaacgctaccgcatcgaagtcggccgcaaccagcaggcgacgccgaaggacatcgtc
ggcgcgatcgccaacgaggccggcatcgaaagccgctatatcgggcagatcaatctctac
gaggactacagcaccgtcgaactgccgagcggcctgccacacgacgtcctcgacatcctg
cgccgggtgcgcgtgcgccagcaccagctgaacatccgcccgctcgacgccgaggaagcg
aagcgcgacgcggcccgcgtgcggccgggagcccctcgtcccggagcagcgccgcgtcac
gccgcccaccccggcggcaaacccgcccgtcccggaagccccggcccgagatccttcagc
ggcgaaaagcgcacgccctccaccggcttcaagcccggcaagaaaaaaccgcatgatcgc
tga
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