Aromatoleum bremense: pbN1_12070
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Entry
pbN1_12070 CDS
T07149
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
abre
Aromatoleum bremense
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abre03019
]
pbN1_12070 (hrpA)
Enzymes [BR:
abre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
pbN1_12070 (hrpA)
Messenger RNA biogenesis [BR:
abre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
pbN1_12070 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
HA2_N
AAA_30
AAA_22
T2SSE
NACHT
nSTAND3
AAA_23
TsaE
PhoH
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
QTQ31199
LinkDB
All DBs
Position
complement(1251300..1255436)
Genome browser
AA seq
1378 aa
AA seq
DB search
MKTIDTLSAHAGERQSFADCLSADRPRLQRLARDLGRAQGARRERAQADLEALLTRSRAA
LAERKSALPRPDFPPELPVTQKRAEIAAAIAAHQVVIVSGETGSGKTTQLPKICLALGRG
AAGLIGHTQPRRLAARATATRIAQELKSELGQAVGYKIRFTDRIGAATHIKLMTDGILLA
ETQGDPLLAAYDTLIIDEAHERSLNIDFLLGYLKTLLPRRPDLKVIVTSATLDADRFARH
FGTPEKPAPVIEVSGRLYPIEMRYRPVENDDEPATDPRREAARRDKGQGRDLFDAIVDAV
DEAHRSGPGDVLVFLPGEREIREAAEALRKAHHAGSTEVLPLFARQSAQEQSRVFAPGRG
RRVVLATNVAETSLTVPGIRYVVDTGLARVKRYSHRNKVEQLQIEKIAQSAAKQRAGRCG
RVMDGICFRLYDEADFEKRPAHTDPEILRSSLAGVILRMKSLHLGEVEDFPFLDAPLSRM
IADGYQLLVELGALNEPSRDGEVRELTPIGRELAKLPLDPKIGRMILAARDRGCIKEVLV
IAAALSVQDPRERSPESPGAADQAHAKFRGGEQDQRSEFLWYWNLWKAWDEVLRHESGAK
QKAWAKRHHLSYMRLREWRDVHSQLLTLCAEHGWKENQQPAQYEPLHTALLTGLLGHVGS
KIEDASGPQAGSYLGARGIRFWPHPGSALAKKAGKWIVCAELVETSRLFGRCLARIEPEW
LEEVGGHLVKRQVFEPHWSKASGAVRAWERGTLHGLVLYPRRGVGYRDTDPALCRELFIR
EGLVQGEIAEGPARGMAFLQHNRRLVAEIERLEHKSRRPDVLVDEELIFAFYDAKLPPDV
VDVASFERWRKTAEQAEPKLLHLTRDQLMRHEAEGITTDRFPSSFDVLGQKLKLTYLHQP
GEPDDGVTLTVPLAMLNQVPANRCEWLVPGLLGEKAAALLRTVPQRHRHRLQPIADSAAA
FVEQFEAGEFNGDEALLRALQRFVEERVSLKLPMESFRPENLNPHFFMNFRVVDEHGRVL
GQSRNLAELRTRLRDQVAERFRAARIALPEHEAAKQSNALPRGATPPASRVARAKTGAAM
GGAERQPPSSPASPALGGFTAWTFGPLPELLEVKVAGHDVIGYPALHDDGDSVSLRPYDT
PEEAAKVHRKGLARLFTLVLKDQVRAIEKLPGLRDLALAFIPFGTEAELKAQLVAATLAR
TCLLDPLPPDAASFERRCAEAKPRVTLVAQEFTRLAAALIAEHAALQKRLTGLRAFPEVA
ADIQSQVRELLPKNFLLAFPWERLAEFSRYLKAAGVRLDKLRNNPVRDAQLAADWRSLAQ
PFERELLAKRKAGVTDPALEEFRWLLEELRVGLFAQELKTPMPMSVKRLQKIWDARPR
NT seq
4137 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaccatagacacgctttccgcccacgccggcgaacggcaatccttcgccgactgc
ctgagcgccgatcgcccgcgactgcagcgcctcgcccgcgacctcggacgagcacagggc
gcccggcgggagcgcgcgcaggctgatctcgaggcgttgctgacgcgctcgcgcgcagcc
ctcgccgaacgaaagtcggcgctgccgcgccccgacttcccgccggagctgccggtcacg
cagaagcgcgccgagatcgccgccgccatcgctgcgcatcaggtcgtcatcgtcagtggc
gaaaccggttcgggcaagacaacacagctgccgaagatctgcctcgcgctcggccgcggc
gccgcggggctcatcggtcacacccagccacgccgccttgccgcgcgcgcgaccgcgacg
cgcatcgcgcaggagctgaaatccgagctcggccaggcggtcggctacaagatccgtttc
accgaccgcatcggcgcggcgactcacatcaagctgatgaccgacggcatcctgctcgcc
gagactcagggcgacccgctgctcgccgcgtacgacacgctgatcatcgacgaggcgcac
gaacgcagcctcaacatcgactttctgctcggctacctgaagacgctgctgccgcgccgt
cccgacctgaaagtgatcgttacgtcggcgacactcgacgcggaccgctttgcgcgccat
ttcggcacgcccgaaaagccggcgccggtgatcgaggtttcggggcggctgtatccgatc
gagatgcgctaccggccggtcgagaacgacgacgagcccgcgacggacccgcgccgtgag
gctgcgcgccgcgataagggacaggggcgggatctcttcgacgcgatcgtcgacgccgtc
gacgaggcgcatcgcagcgggccgggcgacgtgctggtgttcctgcccggggagcgcgaa
atccgcgaggctgccgaggcgctgcgcaaggcgcaccacgccggcagtaccgaggttctg
ccgctcttcgcgcgacagtcggcgcaggagcagtcgcgcgtgttcgcgccggggcgcggg
cggcgcgtcgtgctcgcgacgaacgtcgccgagacgtcgctgacggtgccgggcatccgc
tacgtcgtcgataccggcctcgcgcgcgtcaagcgctactcgcatcgcaacaaggtcgag
cagttgcagatcgagaaaatcgcgcagtcggccgcgaagcagcgcgccgggcgctgtggc
cgggtcatggacgggatctgcttccggctgtacgacgaggcggatttcgagaaacgcccg
gcgcacaccgacccggagatcctgcgctcgtcgctcgccggcgtgatcctgcgcatgaag
tcgctgcacctgggcgaagtcgaggatttccccttcctcgatgcgccgctgtcgcgcatg
atcgccgacggctaccagctgctggtcgaactcggcgccctgaacgagccatcccgcgac
ggcgaagtccgcgagctcacgccgattggccgcgaactcgcgaagctgccgctcgacccg
aagatcggtcgcatgatccttgccgcacgcgaccgcggctgcatcaaagaagtgctcgtg
atcgccgccgcgctgtcggtgcaggatccgcgcgagcgctcgcccgagagccccggcgcc
gccgaccaggcgcacgcgaaatttcgcggcggcgagcaggaccagcgctcggaattcctg
tggtactggaacctgtggaaagcctgggacgaagtgctgcggcacgagtccggagccaag
cagaaagcgtgggcgaagcgccatcacctgtcctacatgcggctgcgcgaatggcgcgac
gtgcatagccagctgctgacgctgtgcgccgagcatggctggaaggaaaaccagcaaccg
gcgcagtacgaaccgctccacacggcgctgctgaccggcctgctcggtcacgtcggtagc
aagatcgaggacgcgagcggcccgcaggcgggcagctatctcggcgcgcgcggcatccgc
ttctggccgcatcccgggtcggcgctggcaaagaaggccggcaagtggatcgtctgcgcc
gagctcgtcgagacctcaaggctcttcggccgttgcctcgcgaggatcgagccggaatgg
ctggaagaggtcggcggtcatctcgtcaaacgtcaggtcttcgagccgcactggtcgaag
gcgtcgggagcggtgcgcgcgtgggagcgcggcacgctgcacgggctcgtgctctacccg
cggcgcggggtcggctaccgcgacaccgatccggcgctgtgccgcgaactcttcatccgt
gaaggtctcgtgcagggcgaaatcgccgaggggccggcgcgcggcatggccttcctgcaa
cacaaccggcggctcgtcgccgagatcgaacggctcgaacacaagtcgcggcggccggac
gtgctcgtcgatgaggagctgatctttgctttctacgacgcgaagctcccgcccgacgtc
gtggatgtcgcgagcttcgagcgctggcgcaagacggccgagcaggccgagccgaagctg
ctgcacctgacgcgcgaccagctgatgcgccacgaggccgaaggcatcacgaccgaccgc
ttcccgtcgagcttcgacgtgctcggccagaagctgaaactgacgtaccttcaccagccc
ggtgagcccgacgacggcgtcacgctcaccgtgccgctggcgatgctgaaccaggtgccg
gcgaatcgctgcgagtggctcgtgcccggcctgctcggggaaaaggccgccgcgctgctg
cgcaccgtgccgcagaggcatcgccaccggctgcagccgatcgccgacagcgccgcagct
ttcgtcgaacagttcgaggcgggcgagttcaatggcgacgaagcgctgctgcgcgcgctg
caacgcttcgtcgaggagcgcgtgtcgctgaagctgccgatggagtccttccgcccggaa
aacctcaatccgcatttcttcatgaacttccgcgtcgtcgacgagcatggccgcgtgctc
ggccagtcgcgcaacctcgcggaattgcgcacgaggctgcgcgaccaggtcgccgagcgc
ttccgcgcggcgcgcatcgcgttgccggaacacgaagcggcgaagcagtccaacgctttg
cctcgcggagcaacgcctcccgcgagccgcgtcgcacgcgcaaaaaccggcgccgccatg
gggggcgcggagcgccagccgccctcatctcccgcatccccagctctgggaggcttcacg
gcatggactttcggcccgctgcccgagctgcttgaagtaaaggtcgccgggcatgacgtc
atcggctacccggcgctgcatgatgacggcgacagcgtttcgctgcgcccctacgatacg
cccgaggaagcggcgaaagtccatcgcaaggggctcgcgcggctcttcacgctcgtgctg
aaggatcaggtcagggcgatcgagaagctgccgggcctgcgtgacctggcgctcgcgttc
atcccgttcggcaccgaggccgaactcaaggcgcaactcgtcgccgcaactctcgcgcgc
acttgcctgctcgatccgctgccacccgacgccgcaagcttcgagcggcgctgcgcggag
gccaagccgcgcgtcacgctcgtcgcgcaggaattcacgcgcctcgccgcggcgttgatc
gccgagcacgcggcgctgcagaaacggctgaccgggctgcgcgcgtttcccgaggtcgcc
gccgatatccagtcgcaagtgcgcgaactgctgccgaagaactttctgctcgcgttcccg
tgggagcgcctggcggaattttcccgctacctgaaagcggccggcgtgcgactcgacaag
ctgcgcaacaatccggtgcgcgacgcccaactcgccgccgactggcgctcgctcgcgcag
ccgttcgagcgcgagctgctcgcgaaacgcaaggcgggcgtcaccgatccggcgctcgag
gaattccgctggctgctcgaagagttgcgcgtcgggctgttcgctcaggaactgaagacg
ccgatgccgatgtcggtcaagcggctgcagaagatctgggatgcgcgaccgcgttga
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