Aromatoleum bremense: pbN1_21190
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Entry
pbN1_21190 CDS
T07149
Name
(GenBank) putative excinuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
abre
Aromatoleum bremense
Pathway
abre03030
DNA replication
abre03430
Mismatch repair
abre03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
pbN1_21190
03430 Mismatch repair
pbN1_21190
03440 Homologous recombination
pbN1_21190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
abre03032
]
pbN1_21190
03400 DNA repair and recombination proteins [BR:
abre03400
]
pbN1_21190
Enzymes [BR:
abre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
pbN1_21190
DNA replication proteins [BR:
abre03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
pbN1_21190
DNA repair and recombination proteins [BR:
abre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
pbN1_21190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
DUF7508
DNA_pol_A_exo1
Imm21
Motif
Other DBs
NCBI-ProteinID:
QTQ32109
LinkDB
All DBs
Position
2213928..2215340
Genome browser
AA seq
470 aa
AA seq
DB search
MSLPDSLVLIDVETTGANPVSDRVTEIAVLRIERGEIVARWESLVNPERPIPSLIQRLVG
ITDEMVAAAPTFAELADSVRGHLDGAVFVAHNARFDYGFIRNEFSRLGQQFEASVLCTVK
LSRALYPQHHRHGLDALIERHGFTCGARHRAMGDTDVLWQFARLVSGSFSADVLAHACER
AMKLPARPPGLPEGALEGVPDAPGVYSFFGDSDRLLYVGRSASLRARVMEHFSAGGRDGR
EAGLARQVRRVEWEETAGEFAASLREADLLRARRPLHARPAVGGEEVFGLRLVPQRKRAP
IFERVPLHATDPAAWEAVHGTFRTRKEADSLLRELAQLYQLCPRRLGLEGGSGACGAHEA
RRCAGVCAGKESIAAHDARLAGALESVALRAWPWAGAVVIEERCAHSGREAFHVVDHWCH
LGSADSAEALAALLGNLPARRFDLDTYRMLVRWFAAEANLAAVRPIETLG
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcttcctgattcgctggtcctgatcgacgtcgagacgacgggcgcgaaccccgtg
tccgaccgcgtcaccgagattgccgtgctgcgcatcgagcgcggtgaaatcgtcgcgcgc
tgggagagcctcgtcaacccggagcgccccatcccgtcgctgatccagcgtctggtcggc
atcaccgacgagatggtcgccgcggcaccgacgttcgccgaactcgccgacagcgtgcgc
gggcatctcgacggggcggtgttcgtcgcccacaacgcgcgcttcgattacggcttcatc
cgcaacgagttctcccgcctcggccagcagttcgaggcgtcggtgctgtgcaccgtcaag
ctttcccgcgcgctgtacccgcaacaccaccgtcacgggctggacgcgctgatcgagcgc
cacggtttcacgtgcggcgcgcgccatcgcgcgatgggcgataccgacgtgctgtggcag
tttgcgcgcctggtctccggatccttttccgccgacgtgctcgcgcacgcatgcgagcgg
gcgatgaagctgccggcccggccgcccggactgcccgaaggggcgctcgagggcgtgccg
gacgcgccgggcgtgtattcgttcttcggcgacagcgaccggctgctgtacgtcgggcgc
agcgcgagcctgcgggcgcgggtcatggagcatttttcggccggcggccgcgacggccgg
gaggcgggattggcgcgccaggtgcgccgcgtggaatgggaggagactgccggcgagttt
gccgcgtcgctgcgtgaagccgacctgctcagggcgcgtcggccgcttcatgcacggccg
gcggtcggcggcgaagaggtgttcggcctgcgcctcgtgccacagcgcaagcgcgcaccg
atcttcgagcgcgtgccgctgcatgcgaccgatccggcggcctgggaagcggtccacggc
acttttcgtacccgcaaggaggccgacagcctgctgcgtgaactcgcccagctctaccag
ctatgtccgcgccgtctcggtctcgagggcggcagcggcgcctgcggcgcgcacgaggcg
cggcgctgcgccggtgtgtgcgccggcaaggagagcatcgccgcgcacgatgcgcgcctc
gcgggcgcgctggagtcggtggcgctgcgcgcgtggccgtgggccggcgcggtcgtcatc
gaggagcgctgtgcgcattcggggcgcgaggctttccatgtcgtcgaccactggtgtcat
ctcggcagcgcggacagcgctgaggcgctcgcggcgctgctcggcaacctgccggcgcgc
cgcttcgacctcgacacttaccgcatgctggtgcgctggttcgctgcggaggcgaatctg
gctgccgtgcgaccgatcgagacactcggctga
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