Aromatoleum bremense: pbN1_23310
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Entry
pbN1_23310 CDS
T07149
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
abre
Aromatoleum bremense
Pathway
abre03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
pbN1_23310 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
abre03021
]
pbN1_23310 (rpoC)
03400 DNA repair and recombination proteins [BR:
abre03400
]
pbN1_23310 (rpoC)
Enzymes [BR:
abre01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
pbN1_23310 (rpoC)
Transcription machinery [BR:
abre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
pbN1_23310 (rpoC)
DNA repair and recombination proteins [BR:
abre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
pbN1_23310 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Peptidase_M23
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
QTQ32321
LinkDB
All DBs
Position
2438993..2443222
Genome browser
AA seq
1409 aa
AA seq
DB search
MKSLLADLFKQTLPNEDQFDAITIGLASPDKIRSWSYGEVKKPETINYRTFKPERDGLFC
AKIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMAHIELASPTAHIWFLK
SLPSRLGMVLDMTLRDIERVLYFEAFVVVEPGMTPLNRGQLLTEDDYLAKVEEYGDDFDA
LMGAEGIRGLLRTLDVKLEIEKLRGDLETTGSEAKIKKFSKRLKVLEAFMQSGIKPEWMI
LEVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRM
LQESVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVG
PQLKLHQCGLPKLMALELFKPFIFNKLELMGLATTIKQAKKMVESQEPVVWDILEEVIRE
HPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQM
EARTLMLASNNVLSPANGEPIIVPSQDIVLGLYYATREGVNVAGEGMAFSDVGELKRAYE
SKQLSLHARVSVRLKEVEVSADGERRDKITRYNTTAGRAMLSEILPPGLPFSVLDKPMKK
KEISKLINASFRRCGLKETVVFADRLMQFGFRLATRAGISIAVKDMLVPKQKDVLIHAAE
QEVKEIARQYTSGLVTDGERYNKVVDIWGRAGDQVAKAMMDQLGQEDVVNRHGDTVKQES
FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITTNFREGLNVLQYFISTHG
ARKGLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTRDGFVMKALIEGGEVIEPLRDR
ILGRVCAEDVVNPESQETVIEAGSLLDEDAVDLIESLGIDEVKVRTALTCETRYGLCGKC
YGRDLGRGSQVNVGEAVGVIAAQSIGEPGTQLTMRTFHVGGAASRAAAASGVESKSAGTV
RFAGNMRYVSNAKGEKVIIARSAEIVVADDMGRERERHKLPYGATLLVDDGAPVKAGVLL
ATWDPHTRPIVTEYSGTVKFENVEEGATVAKQIDEVTGLSTLVVIDGKRRTSGASSKGVR
PQVKLLDERGEEVKIAGTDHSVAITFQVGSLITVKDGQEASVGDVLARIPQESAKTRDIT
GGLPRVAELFEARPPKDAGVLAEYTGTVSFGKDTKGKQRLVITEADGTAHEFLIPKDKHV
MVHDGQVVNKGELIVDGPADPHDILRLQGIEALARYIIDEVQDVYRLQGVKINDKHIEVI
VRQMLRRVVINDAGNSRFIREEQVERSEVLDENDRIEAEGKLPAQYQNVLLGITKASLST
DSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGMAYHRNRKAQNAGE
DLGPEHAWAEMQEVPPEVPTDVSQGVQAG
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagcctgctcgctgacctgttcaaacaaaccctgccgaacgaagaccagttcgac
gcgatcacgatcggcctcgcgtcgccggacaaaatccgctcgtggtcgtacggcgaagtc
aagaaacccgagacgatcaactaccgcacgttcaagcccgaacgcgacggcctgttctgc
gcgaagatcttcggcccggtcaaggactatgagtgcctgtgcggcaagtacaagcgcctc
aagcaccgtggcgtgatctgcgagaagtgcggcgtcgaggtgacgctgtcgaaggtgcgc
cgcgagcgcatggcgcacatcgaactcgcaagcccgaccgcgcacatctggttcctgaag
agcttgccgagccgtctcggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtg
ctgtacttcgaagccttcgtcgtcgttgaaccgggcatgacgccgctcaaccgcggccag
ctgctgaccgaggacgactacctcgcgaaggtcgaagagtacggtgacgacttcgatgcg
ctgatgggcgccgagggcatccgcggtctgctgcgcacgctcgacgtcaagctcgagatc
gagaagctgcgcggcgacctcgagacgaccggctccgaagcgaagatcaagaagttctcg
aagcgcctgaaagtgctcgaggcgttcatgcagtcgggcatcaagcccgagtggatgatc
ctcgaagtgctgccggtgctgccgccggacctgcgtccgctggtgccgctcgacggcggc
cgcttcgcgacgtcggacctcaacgacctctaccgccgcgttatcaaccgcaacaaccgc
ctcaagcgtctgctcgagctgaaggcgcccgagatcatcgtgcgcaacgaaaagcgcatg
ctgcaggagtcggtggattcgctcctggacaacggccgtcgcggcaaggcgatgaccggc
gcgaacaagcgtccgctgaagtcgctcgccgacatgatcaagggcaagggcggccgcttc
cgccagaacctgctcggcaagcgcgtcgactactcgggccgttcggtcattgtcgtcggc
ccgcagctcaagcttcaccagtgcggcctgccgaagctgatggcgctcgagctcttcaag
ccgttcatcttcaacaagctcgaactgatggggttggcgacgacgatcaagcaggcgaag
aagatggtcgagagccaggaacccgtcgtctgggacatcctggaagaagtcatccgcgaa
catccggtgatgctgaaccgcgcgccgacgctgcaccgcctcggtatccaagccttcgag
ccggtgctgatcgaaggcaaggcgatccagctgcatccgctcgtctgcgtcgcgttcaac
gccgacttcgacggcgaccagatggccgtccacgtgccgctgtcgctcgaagcgcagatg
gaagcacgcacgctgatgctggcgtcgaataacgtgctgtcgccggcgaacggcgagccg
atcatcgtgccgtcgcaggacatcgtgctgggtctgtactacgcgacgcgcgaaggcgtg
aacgttgctggcgaaggcatggcgttctccgacgtcggcgagctcaagcgcgcgtacgag
tcgaagcagctgtcactgcacgcccgcgtgtcggtgcgcctgaaggaagtcgaagtgtcg
gccgacggcgagcggcgcgacaagatcacgcgctacaacaccaccgccggtcgcgcgatg
ctgtccgagatcctgccgccgggactgccgttcagcgtgctcgacaagccgatgaagaag
aaggaaatctcgaagctgatcaacgcttcgttccgtcgctgcggtctgaaggaaacggtc
gtgttcgccgaccggctgatgcagttcggcttccgtctggcaacgcgcgctggcatctcg
atcgcggtcaaggacatgctcgtgccgaagcagaaggacgtgctgatccatgccgccgag
caggaagtgaaggaaatcgcgcggcaatacacatccggtctcgtgaccgacggcgaacgc
tacaacaaggtcgtcgatatctggggtcgcgccggcgaccaggtcgcgaaggcgatgatg
gaccagctcggccaggaagacgtcgtcaatcgccacggcgacacggtgaaacaggagtcc
ttcaactcgatctacatgatggcggactcgggcgcgcgcggttccgcagcgcagatccgc
cagctcgccggcatgcgcggcctgatggcgaagccggatggttcgatcatcgagacgccg
atcacgacgaacttccgcgaaggtctgaacgtcctgcagtacttcatctcgacgcacggt
gcgcgtaagggtctggccgataccgcgctgaagaccgcgaactcgggttacctgacgcgc
cgcctcgtcgacgtgacgcaggatctggtcgtcaccgaggacgattgcggcacgcgcgac
ggcttcgtgatgaaggcgctgatcgagggtggcgaggtcatcgagccgctgcgcgaccgg
atcctcggccgcgtttgtgccgaggatgtcgtgaacccggagtcgcaggaaacggtcatc
gaggccggctcgctgctcgacgaggatgcggtggacctgatcgagagcctgggtatcgac
gaagtcaaggtgcgtactgcattgacgtgcgaaacccgctacggcctgtgcggcaagtgc
tacggtcgtgatctcggccgcggctcgcaggtgaacgtcggcgaagcggtcggtgtcatc
gccgcccagtcgatcggtgagccgggcacgcagctgacgatgcggacgttccacgtcggc
ggcgcggcgtcgcgggctgccgccgcgagcggcgtcgagtcgaagtccgccggtacggtg
cgcttcgccggcaacatgcgttacgtctcgaatgcgaagggtgagaaagtcatcattgcg
cgctcggccgagattgtcgtcgccgatgacatgggccgcgagcgcgagcgccacaagctg
ccgtacggcgcgacgctgctggtcgacgacggcgcgccggtcaaggccggggtgctgctg
gcgacgtgggacccgcacacccgcccgatcgtcaccgaatattccggtacggtgaagttc
gagaatgtcgaagagggcgcgaccgtcgcgaagcagatcgacgaagtgaccggtttgtcg
acactggtcgtcatcgacggcaagcggcgcacgagcggcgcgtcgtcgaagggtgtgcgt
ccgcaggtcaagctgctcgacgagcggggcgaggaagtcaagatcgccggcaccgaccat
tcggtggcgatcaccttccaggtcggctcgctgatcaccgtcaaggacggccaggaagcg
agcgtcggcgacgtgctcgcgcggattccgcaggaatcggcaaagacccgcgacatcacc
ggtggtctgccgcgcgtggcggagctcttcgaggcgcgcccgccgaaggacgctggcgtg
ctggcggaatacaccggcacggtgtcgttcggcaaggacaccaagggcaagcagcgtctc
gtcattaccgaagccgacgggacggcgcacgaattcctgatcccaaaggacaagcacgtc
atggtccatgacgggcaggtcgtcaacaagggtgagctgatcgtcgatggaccggccgac
ccgcacgacatcctgcgtctgcagggaatcgaggcgctggcgcgctacatcatcgacgag
gtgcaggacgtctatcgcctgcagggtgtgaagatcaacgacaagcacatcgaagtgatc
gttcgccagatgctgcgccgcgtggtcatcaacgacgcgggcaactcgcgcttcattcgc
gaggagcaggtcgagcgttccgaagtgctcgacgagaacgaccgcatcgaggccgagggc
aagctgccggcacagtaccagaatgtcctgctgggtatcacgaaggcgtcgctgtccacc
gattcgttcatctcggcggcatccttccaggaaacgacgcgtgttctgaccgaagcggca
atcatgggcaaacgcgacgatctgcgcggactgaaggaaaacgtcatcgtcggccgcctg
attccggcgggtaccggcatggcatatcaccgcaaccgcaaggcgcagaacgcaggggag
gacctgggccccgagcacgcatgggcggaaatgcaggaagtaccgccggaggtgccgacc
gacgtctcgcagggcgtgcaggccggttga
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integrated database retrieval system
