Aromatoleum bremense: pbN1_28710
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Entry
pbN1_28710 CDS
T07149
Symbol
rhlE3
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
abre
Aromatoleum bremense
Pathway
abre03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
pbN1_28710 (rhlE3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
abre03019
]
pbN1_28710 (rhlE3)
Enzymes [BR:
abre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
pbN1_28710 (rhlE3)
Messenger RNA biogenesis [BR:
abre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
pbN1_28710 (rhlE3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Utp25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
QTQ32859
LinkDB
All DBs
Position
complement(3005633..3007108)
Genome browser
AA seq
491 aa
AA seq
DB search
MSFADLGLIPELLRAVAESGYTTPTPIQQQAIPVVLSGRDVMGGAQTGTGKTAGFTLPLL
QRLARHASTSTSPARHPVRALILAPTRELAMQVFESVKTYSKYVPLRSTCIYGGVDMKPQ
IQDLRTGVEIVVATPGRLLDHVQQKTIQLGQVEMLVLDEADRMLDMGFIPDIRRILDLLP
AARQSLLFSATFSDEIKKLADQMLKEPQLIEVARRNMVSETITHRVHPVSAGLKRNLLAH
LLRHEPDTQALVFVATKLACARLAHFLERHGIAADAIHGDKGQAQRTDTLEAFKSGKLRV
LVATDVAARGLDIDDLPSVINFELPHTAEDYVHRIGRTGRAGRQGNAVSLVCAEEKHHLA
EIEKLIKLQIPQEIVPGFAPDPDFFETASRSRHGRRTAAASAPEPAKETGQKTAPAPRAA
RPASSARSGEVRRRPGRSTIASDGFDYTKPYEPAASPTDPNRPADQAAGEVGSPRRNQRP
IAVLLGGLGRK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgagtttcgccgacctcggactgatccccgagttgctacgtgcagtagccgaatccggc
tacaccacccccaccccgatccagcagcaggcgatcccggtggtcctgtccggccgcgac
gtcatgggcggcgcccagaccggcaccggcaagaccgcgggcttcacgctgccgctgctg
cagcgcctcgcgcgccacgccagcacttcgacgagtccggcgcgccatccggtgcgggcg
ctgatcctcgcgccgacgcgcgaactcgcgatgcaggtcttcgagtccgtcaagacctac
agcaagtacgtcccgctgcgcagcacgtgcatctatggcggcgtcgacatgaagccgcag
atccaggacctgcgcaccggcgtcgagatcgtcgtcgcaacgccggggcggctcctcgac
cacgtccagcagaaaaccatccagctcggccaggtcgagatgctcgtgctcgacgaagct
gaccgcatgctggacatgggattcatccccgacatccgccgcatcctcgacctgctgccc
gccgcgcgccagagcctgttgttctcggcgacattctcggacgagatcaagaagctcgcc
gaccagatgctgaaggaaccgcagttgatcgaagtcgcgcgccgcaacatggtgtccgaa
acgatcacccaccgcgtgcacccagtttcagcgggcctcaagcgcaacctgctcgcgcat
ctgctgcgccatgagccggacacgcaggcgctggtgttcgtcgcgacgaagctcgcgtgc
gcccgtctcgcgcacttcctcgagcgccacggcatcgccgccgacgcgatccacggcgac
aagggccaggcgcaacgcaccgacacgctcgaagccttcaagtccggcaagctgcgggtg
ctcgtcgcgaccgacgtcgcggcgcgcgggctcgacatcgacgacctgccgtcagtgatc
aatttcgaacttccgcataccgccgaagactacgtgcaccgtatcggccgcaccggacgc
gccggacgccagggcaacgcggtgtcgctggtgtgcgcggaagagaaacaccatctggcg
gaaatcgagaagctcatcaagctgcagattccgcaggaaatcgtgccgggcttcgccccc
gatccggattttttcgaaaccgccagccgcagccggcatggccgccgcacggccgccgcc
agcgctcccgaaccggcgaaggaaaccggccagaaaacggctcctgcgccgcgcgctgcc
cggccggcatcgtccgcacggagcggcgaagtccgccggcgcccgggacgatcgacgatc
gcctcggacgggttcgactacaccaagccgtacgaaccggcagcttcgccaaccgatccg
aatcggccggcggatcaggccgcaggagaggtcggttcgccgcgtcgcaaccaacgcccg
atcgcggtgctgctcggcggcctcggccggaaatag
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