Aromatoleum bremense: pbN1_29200
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Entry
pbN1_29200 CDS
T07149
Symbol
uvrD1
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
abre
Aromatoleum bremense
Pathway
abre03420
Nucleotide excision repair
abre03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
abre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
pbN1_29200 (uvrD1)
03430 Mismatch repair
pbN1_29200 (uvrD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
abre03400
]
pbN1_29200 (uvrD1)
Enzymes [BR:
abre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
pbN1_29200 (uvrD1)
DNA repair and recombination proteins [BR:
abre03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
pbN1_29200 (uvrD1)
MMR (mismatch excision repair)
Other MMR factors
pbN1_29200 (uvrD1)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
AAA_12
AAA_30
Viral_helicase1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QTQ32908
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All DBs
Position
3054384..3056606
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AA seq
740 aa
AA seq
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MSDLLANLNPEQLQAVTLPPQHALILAGAGSGKTRVLTTRIAWLVQTGQVDPQGVLAVTF
TNKAAKELLARLSAMLPLSFNRSARGMWIGTFHGLCNRLLRAHHRDAGLPQLFQILDSGD
QLAAIKRLLKALNVDDEKFPPRELQHFINGQKEAGLRPHAVEAWDDYTRRRVELYIEYES
QCQRESVVDFAELLLRTYELLERNEPIRKHYQHRFRHILVDEFQDTNQLQYRWLKLLADH
GRDGAAKLFCVGDDDQSIYRFRGADVGNMRDFEREFHVASVIRLEQNYRSHGNILDAANA
IIRHNAGRLGKNLWTERGAGEPIRVFEACADLDEARWIVDEIQSLVRDGMSRSGIALLYR
SNAQSRVLEHQLFSSGISYRVYGGLRFFERQEIKHALAYLRLIANPDDDTAFSRVVNFPT
RGIGARSVEALQDAARTWNSSLYAAVPHLAGKPGTVLAQFVRLVEDLRRDTAKLPLPELV
DHVLDASGLRNHFRNEKEGQERLENLDELINAAANFVAEASVQADAQDMAHTLLADFLAH
ASLEAGEHQAEAGSDAVQLMTVHSSKGLEFDAVFLSGLEEGLFPHENSILETEGLEEERR
LMYVAVTRARQRLYLSFAQSRMLHGQTRYNLRSRFLEEIPEGLTKWLSPPNPRTSAVRSG
FGGYYQPSRGGVVAKASEQPVSRSRDLGGLRVGQLVTHAKFGQGVIISAEGSGSDARVQI
NFGAAGIKWLMLAVAKLDPA
NT seq
2223 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacctgctcgccaacctcaatcccgaacaactccaggccgttaccttgccgccg
caacacgcgctgatcctggccggcgccggttccggcaagacccgcgtcctgacgacgcgc
atcgcgtggctcgtgcagaccgggcaggtcgatccgcaaggtgtgctggccgtcaccttt
acgaacaaggcggcaaaggaactgctcgcacgcctgtccgcgatgctgccgctgagcttc
aaccggtcggcgcgcggcatgtggatcggtacgttccacggactctgcaaccgcctgttg
cgcgcgcatcaccgcgacgccggcctgccacagctgttccagatcctcgattcgggcgac
cagcttgccgcgatcaagcggctcctgaaggcgctgaacgtcgacgacgagaaattcccg
ccgcgcgaactgcagcatttcatcaatggccagaaggaagccgggctgcgtccgcacgcc
gtcgaagcctgggacgattacacccgccgccgggtcgagctttacatcgagtacgagtcg
cagtgccagcgcgagtcggtcgtggattttgccgagctgctgctgcgcacttacgaactg
ctggagcgcaatgaaccgatccgcaagcattaccagcaccgtttccgccacatcctggtc
gacgaattccaggacacgaaccagctccagtaccgctggctgaagctgcttgccgaccac
ggtcgcgacggagcggcgaagctgttctgcgtcggcgacgatgaccagtcgatctaccgt
tttcgtggcgccgacgtcggcaacatgcgcgatttcgagcgcgagttccacgtcgccagc
gtcattcgcctcgagcagaattaccgttcgcacggcaacatcctggatgccgcgaacgcg
atcatccgccataacgccggccgtctcggcaagaatctgtggaccgaacgcggcgccggc
gagccgatccgcgtgttcgaggcctgcgccgatctggacgaggcgcgctggatcgtcgac
gaaatccagtcgctggtgcgcgacggcatgagccgttccggcatcgcgctgctgtatcgc
tcgaacgcgcagtcgcgcgtcctggagcaccagctcttttccagcggcatctcgtatcgt
gtctatggcggcctgcgtttcttcgagcggcaggaaatcaagcatgcgctcgcctacctg
cgcctgatcgcgaacccggacgacgacaccgcgttcagccgcgtcgtcaattttccgacg
cgcggcatcggcgcccgttcggtcgaggcactgcaggacgcggcgcgcacctggaacagc
agcctgtacgcggcggtgccgcatctggcggggaagccgggcacggtgctggcccagttc
gtgcgactggtcgaagacctgcggcgcgacaccgcgaagctgccgctgccggagctcgtc
gaccacgtgctcgacgcgtcgggcttgcgcaaccatttccgcaacgagaaagaaggccag
gagcggctcgaaaacctcgacgaactgatcaatgcggcggcgaacttcgtggccgaagca
agcgtgcaggccgatgcgcaggacatggcgcacacgctgctcgccgattttctcgcgcac
gcgtcgctcgaggccggcgagcaccaggccgaggccggcagcgacgcggtgcagttgatg
acggtgcattcgtcgaaagggctggagttcgacgcggttttcctttcgggcctcgaggaa
gggctgtttccgcacgagaacagcattctggagacggaaggactggaggaggagcgccgg
ttgatgtacgtcgcggtgacgcgggcgcgccagcggctttacctgtcgttcgcgcagagc
cgtatgctgcacgggcagacgcgctacaacctgcgttcgcgctttctcgaggaaattccc
gagggactcacaaagtggctgtcaccgccgaatccgcgtacgagcgcggtgcgcagcggg
ttcggcggctactatcagccgtcgcgcggcggcgtggtggcgaaggcgtcggaacaaccg
gtttcgcgcagccgcgatctgggcggcttgcgtgtcggtcagctggtcacccatgccaag
ttcggccagggcgtgatcatctccgctgagggcagcggctcggatgcccgggtccagatc
aacttcggcgccgccggcatcaagtggctgatgctcgcggttgcgaagctcgatcccgcc
tga
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